Protein Info for GFF1685 in Xanthobacter sp. DMC5

Annotation: ABC transporter ATP-binding protein uup

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 PF00005: ABC_tran" amino acids 21 to 148 (128 residues), 82.4 bits, see alignment E=1.7e-26 amino acids 299 to 433 (135 residues), 83.2 bits, see alignment E=9.6e-27 PF16326: ABC_tran_CTD" amino acids 533 to 601 (69 residues), 59.8 bits, see alignment E=8.8e-20

Best Hits

Swiss-Prot: 53% identical to HFAC_CAUVC: Holdfast attachment protein C (hfaC) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: None (inferred from 88% identity to xau:Xaut_2599)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (609 amino acids)

>GFF1685 ABC transporter ATP-binding protein uup (Xanthobacter sp. DMC5)
MAPPLVLLQDIHLRFGATPLLDGAELSVSAGERVCLVGRNGSGKSTLLKVAAGLVEPDSG
TRFFQPGTTVRYLQQEPDFSGYATTLAYVEAGLGPGDDAYRAQYLLTELGLTGQEDPAHL
SGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESELKGLKSAMVLISHDRRFLE
TLSRATVWLDRGQTRRLEQGFGAFEAWRDEVLEQEETERHKLDRKIVAELDWLRYGVTAR
RKRNVRRLGLLHSMRKDRRDERRAVGNVKLAVSEAEASGKLVIEAKHIAKAFGEREVVKD
FSTRILRGDRIGIIGPNGAGKTTLIKLLTGELAPDSGTVKLGTNLEVASLDQKRAALDPG
TTLRDALTGGGSDQVQVGGAPKHVMGYLKDFLFTPEQANAPLSVLSGGERGRLMLARALA
LPSNVLVLDEPTNDLDLETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVIMAEGDGVF
REYAGGYSDMLSQRGRGVEARDKSAPAAKAKGGEQKPDAGKGTGGAAAGGKRRLSFHEQH
ALKTLPKTMDDLRANLEKLAAEIADPALYARDPARFDKASAALAETQAALDAAEEEWLRL
EILKEELEG