Protein Info for GFF1677 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Peptidase, M23/M37 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01551: Peptidase_M23" amino acids 289 to 383 (95 residues), 118.4 bits, see alignment E=6.6e-39

Best Hits

KEGG orthology group: None (inferred from 61% identity to ajs:Ajs_0631)

Predicted SEED Role

"Peptidase, M23/M37 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (426 amino acids)

>GFF1677 Peptidase, M23/M37 family (Hydrogenophaga sp. GW460-11-11-14-LB1)
MGGLGVLLLGTGVTAFGIAPLAPDAADLPVRQVVEALDAPTQQDIQSLLAAQPAAPLVLF
RSETTRRDDTAQSLLQRMGVTDSQAQTFLRNDTVARQLLGRAGRLVSVEATDGQALLRLT
ARWLSADERGFTRLVVEKDAQGAFSSRLEQGELTASSRLASGVIRSSLFAATDAAGIPDP
VAIQLAEMFSSSIDFRRDLRQGDRFNVVYESLEADGESLRTGRVLSAEFANDGQQHQAVW
FEEPGHKGGYYSFDGQSSRRYYLASPLEFSRVSSGYGMRFHPITGGRKAHMGVDYAAPTG
TPVRTIGDGTVEFAGVQRGYGNVIYVKHRNNQVTVYAHLSRIGVRKGQRVSQGDFIGAVG
TTGASTGPHLHLEFRDNGVHVDPLAIARQSESIPVPAALRQRFEAVAQLQRMQLNAAASI
QQANAQ