Protein Info for GFF1675 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Ankyrin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF12796: Ank_2" amino acids 35 to 95 (61 residues), 36.2 bits, see alignment E=1.9e-12 amino acids 38 to 127 (90 residues), 44.2 bits, see alignment E=5.8e-15 amino acids 139 to 226 (88 residues), 28.2 bits, see alignment E=5.9e-10 PF00023: Ank" amino acids 67 to 95 (29 residues), 24.5 bits, see alignment 6e-09 amino acids 136 to 165 (30 residues), 19.2 bits, see alignment 3e-07 PF13606: Ank_3" amino acids 67 to 94 (28 residues), 19.5 bits, see alignment (E = 2.6e-07)

Best Hits

Swiss-Prot: 40% identical to Y958_LEIXX: Putative ankyrin-containing lipoprotein Lxx09580 (Lxx09580) from Leifsonia xyli subsp. xyli (strain CTCB07)

KEGG orthology group: K06867, (no description) (inferred from 81% identity to pol:Bpro_4103)

Predicted SEED Role

"Ankyrin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (230 amino acids)

>GFF1675 Ankyrin (Hydrogenophaga sp. GW460-11-11-14-LB1)
VKRRTLLTITSLLMAIASAPAWAQVAPSASEASAYSGLHAAAHQGDAAKIARLVAGGAAL
DATDARGRTPLHVATFARQREAIRALVKAGADINRLENDRYDAVTIASVADDEETLRLLL
QLGASAKQTTSRYDGTALIAAAHLGHDGVVRQLIAAGAPLDHVNNLHWTATIESIVLGDG
GPRHQATLKALIDAGAGLQLADRSGQTPLALARSRGYSAMVTMLEKAGAR