Protein Info for GFF1659 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 252 to 269 (18 residues), see Phobius details amino acids 281 to 298 (18 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details amino acids 338 to 357 (20 residues), see Phobius details amino acids 367 to 387 (21 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 354 (330 residues), 43.6 bits, see alignment E=1.9e-15 PF06779: MFS_4" amino acids 27 to 385 (359 residues), 249.7 bits, see alignment E=5.8e-78

Best Hits

KEGG orthology group: None (inferred from 54% identity to rru:Rru_A1651)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>GFF1659 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MTASAIHAHADAASGLRRAALEAALILAVGMGFGRFAFTAVYPHMVAEGILSLRGGSYAA
SANYAGYLLGAVLCVKARAGSAHRICLWSVIGTAACLMILAVLTQTWAIVAVRGLAGMFS
SLSMVASSLWLLEHRGHHRGAPLLFAGVGVGIALSAEVLVLAAHAGMLSGGMWLTLGVIT
LAIGLLAAPGLVASGSQTLQAAGAAAASPSIQASVAARPLVAVYGLAGLGYIVTATYLPL
LVKSALPHLDAAHVWAVFGLGAAPSCFFWHRVHGRIGTQAALQANLLIQAVGVALPVLSQ
SPAAYLSSALLVGGTFMGTVTIAMPAAQRAARASGKNLMATMTLVYGVGQIIGPVVADAL
HARSQSFSSSLAVAAGALVVAAAVALAL