Protein Info for GFF1656 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 838 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 197 to 220 (24 residues), see Phobius details amino acids 226 to 251 (26 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details amino acids 293 to 311 (19 residues), see Phobius details amino acids 317 to 335 (19 residues), see Phobius details amino acids 346 to 365 (20 residues), see Phobius details amino acids 381 to 401 (21 residues), see Phobius details PF07696: 7TMR-DISMED2" amino acids 51 to 184 (134 residues), 85.7 bits, see alignment E=5.8e-28 PF07695: 7TMR-DISM_7TM" amino acids 197 to 400 (204 residues), 127.1 bits, see alignment E=1.9e-40 PF02518: HATPase_c" amino acids 568 to 684 (117 residues), 73 bits, see alignment E=5.5e-24 PF00072: Response_reg" amino acids 712 to 819 (108 residues), 33.4 bits, see alignment E=8.7e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (838 amino acids)

>GFF1656 hypothetical protein (Variovorax sp. SCN45)
VIATIAGLLRALFCSALMLVVCGAASAKGNPAPLTQSPGLAVDGHRMLQGDYLIEDGVPL
SLPDVTALPGSAWKRRPWSSASYGFATAPHWFRSDPFTASPDGSGTLLIEVGYPLLDHLD
LYVRVNAAASWTRWSLGDKQAFEQRPHDTPSFVVPVSVQPGDRVEILARVQTEGAMRFPL
SVWQPRQFENAERRSLLVNGIYVGLMGGIFFYHLIIFLILRERIYLYYIGWILVTSGFIL
SYNGIAFQYLWPQATTWNDWCRIVFLFLATGLFTSFTIQFVSNAATAPRRWHAAPVLLAI
ALAVGASWLPFPQAVRVALLVQFVGTLVCFGLAIGPARAGHTYARVFLVTFSGVLIGAAL
HTLDMLGVTAYFETSINFEVAPQVGSAFSVLLFSLALAHRLLEERRQRSIATALAQTNAT
LADSMRVQQERSEFLLKIKDRLRTDAERRDQDKSRFLADAIHDLRQPLQVIGNALNPIGG
AIRAGHTVNALNLAQMATRAAGNMRSQLAAILDLSRLESGFVKAELSDFDLVTLVRDTVE
QTRAIAQESGTCVEFDPPLGKPVFVRSDRHFLQRILLNLVSNGIKYRSADGGRRSHVRLL
LTTHGQLTHLAIQDNGLGIPEEVLQSNVIFKPFFQLNNRHAEAEKGVGLGLSIVSALLDL
LDNHQLSIQSEVGVGSTFTLEIPASVIAPVFEAIPHDDFMAGGIEAARGKYVVLLEDDEL
VRQSLAAVFNAHGVLYEAWGSIEEMRQQLPFTERAPDVLLSDYRLPDGKTALDAIELMRS
HWSDVPTLILTGESLNSYALTSLRGIAICYKPVAPLDLLRRIAASAMRMAAPSNFGVL