Protein Info for GFF1641 in Variovorax sp. SCN45

Annotation: Polyketide synthase modules and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1770 transmembrane" amino acids 74 to 92 (19 residues), see Phobius details amino acids 929 to 946 (18 residues), see Phobius details PF00501: AMP-binding" amino acids 11 to 407 (397 residues), 229.5 bits, see alignment E=1.2e-71 amino acids 1153 to 1502 (350 residues), 243.3 bits, see alignment E=7.8e-76 PF00550: PP-binding" amino acids 591 to 659 (69 residues), 40.1 bits, see alignment (E = 7.3e-14) amino acids 1661 to 1724 (64 residues), 48.4 bits, see alignment (E = 1.8e-16) PF00668: Condensation" amino acids 687 to 1133 (447 residues), 350.1 bits, see alignment E=3.6e-108 TIGR01733: amino acid adenylation domain" amino acids 1174 to 1576 (403 residues), 418.6 bits, see alignment E=1.2e-129 PF13193: AMP-binding_C" amino acids 1560 to 1634 (75 residues), 40.6 bits, see alignment (E = 8.2e-14)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1770 amino acids)

>GFF1641 Polyketide synthase modules and related proteins (Variovorax sp. SCN45)
MHPVDFVSHLRELAARRPDDTAVIAVTDRDGTAIDTPVSYRRLDTRVRGLAARLQQSFGR
GERALIMLDNSDDYVVSFFACLYAGLIAVPVFPPESTRKRHLAKLEGIAADAGACCVLTH
AAIQASIAGVAGAFTDVPLICVDEIGAEDAGRWTPHTPAPTDIAFLQYTSGSTSAPKGVM
VTHANLMANMRAIEEGLSVGPDDIFASWLPLNHDMGLIGGLLQPLHRGIPVALMSPRYFL
ERPVRWLETVSRHRATISGGPDFAYRLCLDRVSKAQLQKLDLSSWGLAFSGAEPVRADTL
RDFRKQFAPAGFAAAALYPCYGLAESTLFVTGGQRGAGMVAHDFSSQALARGIVELEAET
GATLVGCGRSVSGHAVRIVDPASLAVRDAGAVGEIWATGPSIGSGYWNKPEVSRQTFVEC
DGATWLRTGDLGFIHDGQLYVAGRIKDMIIVRGHNLYPQDIERMIELEVDIVRKGRVAAF
AVSGPGAEGIGVAAEVSRSTQKLVKPEALVEVLSAAVSEQFGEPLSVVMLLNPGGMPKTT
SGKLQRGACRQGWLDRSADAYAMYAHGEFVLGGSAAANAPAVEPVLDDVEQAVAAIWRDV
LRRDAQQQPPLAREAHFFIHGGNSLAATQVAARIADRWEIEFPVRVLFEQPRLGELAAQV
RRVLATGQRKQRSAIPVLQAERRAQPLALSHAQERQWFLWQLDPKSTAYHVSAALELDGA
LNIDALGAALDELVARHESLRTVFRAAADGTVCQWIQPPLRLAPRQIDLRALPAEAREAA
AAEHASQCHAEPFDLGEGPLLRTALIRIDEARHLLVVITHHIVSDGTSMQVLIDELGAAY
GARARGATPQFAPLPIQYADYALWQRDWLAAGEAERQLVYWRAQLGDEHPVLSLPADHPR
HAVAAYRAASHAFEFDAALTRRLRVTAQAHGATFFMALLAGFQALLHRYTGQQDVRVGVP
VANRHRPETAGLIGFFVNTQVLRAAVQGRMSLAGLLAQTREAALGAQAHQDLPFEQIVEA
LQLQRSLSHSPLFQVMFNHLREDAGVLRMLPGLQAREHRIADGAAQFELTLDIREHADGS
AGAVITYAAELFEPATIERMAGHYRALLEALATEPAQAVGDVQWLDAVEQRQLDEWSAGE
PQAVHAPPVHRLFEAQAQATPDATALIDGDTRFSYAVLNERANRLAHRLIRQGVSPDRIV
AVAIEAAADRVTGLLGVLKAGGTYLPLDPSHPPQRLAQLLEDSGAGVLLTDRNGGAPAPG
GIAQVMLDEAQLKGSEPATNPGVALHGGHLAYVIYTSGTTGRPKGVAVPHGALSMHIRSM
AQRCGMRAEDRSLQFALPHVDAAIEQCLLPLVAGAALVVQQQWCSLAGELEALLQRHRVS
VVDLPPAYARQLMQGQAPFAHAVRLALFGGEAWTGEDLALIRRVLRPAHIVNAYGPTEAV
ITPTAWHGTAHDAQQAVQGYAPIGRPVGQRTAHVLDANLQPVPQGVPGELYLGGEGLARG
YLGRAALTAERFVADPFDAAGGRLYRTGDLARWRGDGQLEYLGRLDHQVKIRGFRIELGE
IEVRLREHAAVREALVVVHDGPAGASLVAYVSPAPAAQIDTAALREQLSRVLPDYMVPSA
IAALDSFPLTAGGKIDRRALPAPAIPSRLDYEVPQGDIAETLASIWAGLLKVEKVGMNDN
FFDLGGNSLLVIRMHRLMEDRLNPGLKVVDLFRFPTVGALARRIEQGRGAAQPADADADA
DTEDADSEQARAQRQRTALLQRRRPTERSF