Protein Info for GFF1636 in Variovorax sp. SCN45

Annotation: Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 PF00668: Condensation" amino acids 49 to 490 (442 residues), 362.1 bits, see alignment E=8.3e-112 PF00501: AMP-binding" amino acids 513 to 854 (342 residues), 293 bits, see alignment E=6.4e-91 TIGR01733: amino acid adenylation domain" amino acids 533 to 928 (396 residues), 434.6 bits, see alignment E=1.7e-134 PF13193: AMP-binding_C" amino acids 912 to 984 (73 residues), 43.3 bits, see alignment 1.2e-14 PF00550: PP-binding" amino acids 1011 to 1071 (61 residues), 44.5 bits, see alignment 3.1e-15

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1100 amino acids)

>GFF1636 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules (Variovorax sp. SCN45)
MSTSEKLSVQRARLTPAQQALLASRLKGTAASEDREPALVRSADPAARAALSFAQRRQWF
LWKLDPDSTAYHIAEGLRLRGALDIEALRAAFQALLARHESLRTVFRAGEDGLAEQVVQP
SLALEIPVIDLSDAPEPLRAELVEEAARAANQKPFDLLRGPLLRVSVIRESEFAHVLVVV
MHHIVSDGWSMQILVDEFVAQYRAISQGEAVELPSLPVQYADYAAWQRQWLDAGERERQL
AYWRSQLGMEQPVLQLPSDHPRKAEGGYRAAGHVVELPAALAQGLRRQMQARGATPFMLL
LAGFQALLHRYTGQEDIRVGVPVANRNRTETEGVIGFFVNTQVLRSPVHGRMGLARLLAQ
ARETALGAQAHQDLPFEQLVEALQPERSMGHSPLFQVMFNYLRGGYEALRNLPGLTMEGC
SLGEKAAQFELTLTAIEDPEGGIKAVFGYARELFEPDTIARMAGHYLALLQALVDAPEQA
VGDVVLRDQAAAPQRGLNALRFADAQPVHRLIERQVQLRPDAVALTCGARALTYAQLNER
ANRLAHRLIASGAGPEKKVGIVMERDAGMVVSVLAVLKSGAAYVPLDPEHPQDRLAYMAA
DSGLSLLLTQSSLQDRIADDAGIRVLAIDRIDLSGEPAHDPEVPLHAEHLAYVIYTSGST
GKPKGVMVRHEALSHFIRSMQATPGMTAEDVLVAVTSLSFDIAALELYLPLSCGARIVLA
SQETVRDGRALAQLVEESGATLLQSTPAGWRLLRAAGWPAAPLHGFKGLCGGEALQSDLA
EDLHGLGVELWNMYGPTETTIWSSAQRVADGHPGIGEAIAATQLRVLDADLQPVPQGVAG
ELYIGGVGLARGYLHRPGLSAERFLADPFGTKGERIYRTGDMVRWSFDGRLQYLSRVDHQ
IKIRGFRIELGEIETQLLAQPEVREAVVVAKEGPGGARLVAYVSLSSDTQPQLLKARISR
ALPEYMVPASIMVLPALPLNMNGKVDRKQLPELEQGTQQVHEEPQGDAERALAVIWAQVL
GVERVGRHDSFFDLGGHSLLAVQMVARVQSAMRADIAIQDVFRHPVLKDMALRTGASATQ
GGADDALSAVDSFIDSLGEV