Protein Info for GFF1635 in Variovorax sp. SCN45

Annotation: Polyketide synthase modules and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6131 transmembrane" amino acids 5845 to 5863 (19 residues), see Phobius details amino acids 5912 to 5931 (20 residues), see Phobius details PF00668: Condensation" amino acids 36 to 486 (451 residues), 346.1 bits, see alignment 7.4e-107 amino acids 1139 to 1576 (438 residues), 154.8 bits, see alignment 8.4e-49 amino acids 2179 to 2609 (431 residues), 239 bits, see alignment 2.3e-74 amino acids 2641 to 3072 (432 residues), 308.2 bits, see alignment 2.3e-95 amino acids 3719 to 4162 (444 residues), 170.9 bits, see alignment 1.1e-53 amino acids 4782 to 5211 (430 residues), 251.1 bits, see alignment 4.9e-78 PF00501: AMP-binding" amino acids 509 to 861 (353 residues), 315.9 bits, see alignment 8.4e-98 amino acids 1597 to 1943 (347 residues), 254.9 bits, see alignment 2.9e-79 amino acids 3097 to 3442 (346 residues), 312 bits, see alignment 1.4e-96 amino acids 4186 to 4524 (339 residues), 289.2 bits, see alignment 1.1e-89 amino acids 5245 to 5596 (352 residues), 266.3 bits, see alignment 1e-82 TIGR01733: amino acid adenylation domain" amino acids 529 to 936 (408 residues), 450.7 bits, see alignment 1.5e-138 amino acids 1617 to 2017 (401 residues), 416.5 bits, see alignment 3.6e-128 amino acids 3116 to 3516 (401 residues), 464.1 bits, see alignment 1.3e-142 amino acids 4206 to 4598 (393 residues), 428.9 bits, see alignment 6.4e-132 amino acids 5265 to 5670 (406 residues), 425.4 bits, see alignment 7.2e-131 PF13193: AMP-binding_C" amino acids 920 to 995 (76 residues), 33.4 bits, see alignment (E = 1.7e-11) amino acids 2001 to 2075 (75 residues), 39.1 bits, see alignment (E = 3e-13) amino acids 3500 to 3575 (76 residues), 42.2 bits, see alignment (E = 3.2e-14) amino acids 4582 to 4654 (73 residues), 40.5 bits, see alignment (E = 1.1e-13) amino acids 5654 to 5730 (77 residues), 40.6 bits, see alignment (E = 1e-13) PF00550: PP-binding" amino acids 1022 to 1084 (63 residues), 50.1 bits, see alignment (E = 6.8e-17) amino acids 2103 to 2162 (60 residues), 52.8 bits, see alignment (E = 9.4e-18) amino acids 3602 to 3661 (60 residues), 39 bits, see alignment (E = 2e-13) amino acids 4681 to 4741 (61 residues), 50.1 bits, see alignment (E = 6.6e-17) amino acids 5757 to 5820 (64 residues), 40.3 bits, see alignment (E = 7.7e-14) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 2480 to 2632 (153 residues), 132.4 bits, see alignment (E = 4.6e-42) PF00975: Thioesterase" amino acids 5847 to 6015 (169 residues), 86.6 bits, see alignment (E = 7.9e-28)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (6131 amino acids)

>GFF1635 Polyketide synthase modules and related proteins (Variovorax sp. SCN45)
LSAPQRRAVYQKIRAEGLSIGQFPIIAGSAAPGEAQALSYAQRRQWFLWKLDVASTAYHI
CGGLRLQGALDIDALRTAFQALVARHASLRTVFAPTHDGLAEQVIMPSLALEIPLVDLGA
IEASRREALAAQEAGRVNGVPFDLTRGPLLRVSVIRLGENEHVLVVVMHHIVSDGWSMQI
LVDEFMALYADGVRGRQAALPVLPVGYADYAAWQRHWMEAGERDRQIAYWREQLGTEHPV
LQLPTDHPRKAEGGYQAAHHGLTVPQALTARLQQRAQAQGASLFMALLAGFQALLHRHTA
QDDIRVGVPVANRNRVETEGVVGFFVNTQVLRNRVDARMPLGQVFEQAVHAALGAQAHQD
LPFEQLVEALQPERSMSHSPLFQVMLNFQRDFKGSARQASQPLPGLSVQAHALGGQAAQF
ELTLDAVQDEAGEVRLKFVYASGLFDADTIARMGTHYLALLEALADDPARAVGDVRLLSE
AESSQLEGWSRVRQADVGASARPLHAMIESQAQTRPDAVAVVYEDASLSYGELNARANRL
AHRLIALGVKPETRVGLAVERSLDMVVGLLAILKAGGAYVPLDPQYPRDRLAYMVHDSAI
SLLVTQSGVRDCVEVREGLRVLELDTLDLRTEPTANPGVAVHADNLAYVIYTSGSTGRPK
GAQLCHRNVARLLGATEPWFRFGPDDVWTMFHSYAFDFSVWEIFGALCTGGRLVVVPYWV
SRSPDDFMALLRSEKVTVLNQTPSAFGQLIHAPALDAGERLALRCVVFGGEALEPESLRP
WIDRYGDSSPQLVNMYGITETTVHVTYRPITRADLEDGKRSPVGIAIPDLGMHVLDGELN
RLPVGVPGELYVAGAGLARGYGNRAGLSAERFVADPFGRAGERLYRTGDLVRWRNDGQLE
YLGRIDHQVKIRGFRIELGEIEGQLLAQPGVREAIVLAKDAPGGARLVAYVSPQAGRQLD
VNTLKSGLGAVLPEYMVPAAWVAMPQGLPLNANGKVDRKALPEPERAGTDAYEAPQGTTE
EALATLWAEVLGVERVGRSDSFFELGGHSLLAIQLLERMRRQGWSVEVRTLFQKPRLAQF
AQALTPVGNEEAPRLDIPESLIPQGCLAVEPGMLALIELSPGHLRAIEAEVPGGAANIQD
IYPLAPLQEGILFHHMMQAEGDVYVNSFLLAFDSQARLAGFVDSLNEVVARHDILRTAVL
WEGLPEPVQVVYRRAGLQVQWLDVGAGDDVAARLDAHVDPAHFRIDVRRAPMLRAIAAHD
PEDGRWLLQVPSHHLALDHASEELLVEEIALILRGRRDALPVPVPFRRFVAQARFGASPQ
EAEKFFTAMLGDVADPTAPFELLDVRGNGSELAEARLLLDAGTSALLRQQARAAGVSAAT
LFHLAWALVLAKTTGRDDVVFGTVLFGRMQGGEDAGRALGMFINTLPLRVRLGIRDVAAC
VRETHAALTGLLHHEHVHLSLAQRCSGLPKGTPLFSTLLNYRHIAHRALDAEHEAAWGGI
ENLGFKESSNYPFAMSVNDRADGFELIAQVDASVGARRVCDYMQAAVRRVLDALVSGSAQ
PAAGFDLLTAPERGKLAAWGANMQSWPDAEPVHRLVERQAGLRPDATALIFGEEQLSYAG
LNVRANRLAHRLVAMGVKPETRVGLAVKRSPDMVVALLAILKSGGAYVPLDPTYPPDRLA
YMVQDSGIALLLTNSEAGERIAAPCRLDLDKVDLDAQPSHNPAVPVHGANLAYVIYTSGS
TGKPKGVAVAHGPLSMHVQSIGEAYGMTPEDRELQFASISFDGAHERTWVPLAFGSALMP
RDEEVWSVERTCAEIERHGITIACFTPGYLHQIAELMGESASRLPIRSYTVGGEAMPRTS
LELVQKVLRPRRVINGYGPTETVITPMIAKAEDGIGFDSAYMPIGRLIGDRTAYVLDAGL
SLVPPGVAGELYLGGEGLARGYLNRAGLSAERFVADPFDDRGGRLYRTGDLVRWGADGQM
EYLGRIDHQVKIRGFRIELGEVEAQLLAQPEVQEAVVVARRGASGARLVGYVSALPGAVI
DGQALRERLGQVLPDYMVPAALVVLDALPLNGAGKVDRATLPEPVFAGAGAHEAARGEVE
QMLAAVWASVLGVEQVGRTDNFFELGGDSILSLQIVARVRQAGWKLTPRQLFERQTVAQL
AAVAQPVETAGRANHGEAEGEVPLLPIQAAFFAQAMPSRHWNQAVLLQSREPLQPASLER
ALAALVRQHDSLRLRYTQEAEGAWRQAYAPLSECQAQTVLWVKHARDAAEIERLCDEAQR
SLDIGRGPLIRALAIEVQDGSWRLLLAIHHLAVDGVSWRILLEDLQTAYAQCRADQAVAL
PAKTSSYKDMALALQAHAATHEAELVFWQALAGTPVLLPCASREAGNTTADMTSVELRLD
RARTQALLKDAPAAYRTQVNDLLLTALGRALCAWGGHESILIDLEGHGREDLFEHVDLSR
TVGWFTSLFPVAIAPLGEPGEAILRVKESLRRIPDRGLGFGVFRHMGSQAQREAMRALPR
AQVVFNYLGQFDGSFDERALWVPAAESAGASVDEGVPREHEFSVNGQVYDGELALSVSFS
RARHDPEAVRGWVERFHSELEALIAHCTSGAMGVSPSDFPLARVSQAQLDRLPVPCSELA
DLYALSPMQQGMLFHSLYEPQGSAYVNQLRVDVDGLDVARFRQAWQAALSRHDILRSGFL
AEGKAPAQWVVRYVEVPLSVHDWRDDAGQARSLDALAQDELARGFDLARPPLMRLVLVRT
AEQRHHMLWTVHHLLLDGWSTSQLMGEVLRHYDGQALPAPGGRYRDYIEWLQGRDATESE
RYWRAQIALVDAPTRLAAALPRPVQDAGRTGHSVHHGALDAAAMQRLTQVARRERVTVNT
MVQAAWALLLGRYTGQRHVVFGATVAGRSTELPGSAQMLGLFINTLPMVASPSAERPVGE
WLRELQARNLASREHEHTPLYEIQRWAGQGGQGLFDSIVVFENYPVDQALKDQAPGGLVF
GEVRNREETNYPMTVTVHGGQTLSLAFHFARDQFDDAAVAEMTRHLLALLEALCGDPERV
LGEVRLLADSEAVRLRALGENLPHRAHEAPVHRLIGQQARRTPEAVALVFGDVSLSYAQL
EARANRLAHRLIALGVRPDTKVGIATERSLEMVVGLLAILKAGGAYVPIDPEYPPERIAY
MLEDSGVSLLLTQSHIAPAIPARQGVQTIELDLLDLDSGPSVDPDVPLHGEHLAYVIYTS
GSTGRPKGAANRHLSLFNRLAWMQDAYALNEADTVLQKTPFSFDVSVWEFFWPLMQGARL
VVAQPGDHREPGKLVELIRRHGVSTIHFVPSMLQAFVAHEGIEACTSLKRIVCSGEALPA
EAQARVFERLPGAGLYNLYGPTEAAIDVTHWSCRADGRNHVAIGRPIAGTKTYVLDDGLN
LAAQGLAGELYLGGIGLARGYLDKSALTSERFVADPFSDAGERLYRTGDLVRWREDGELE
YLGRIDHQVKIRGFRIELGEIEARLLAQPGVREAVVVAQQAAGGARLVAYVSAAAASQAI
DAAQLKQQLSRALPEHMVPGVIVVLQALPLNANGKVDRKALPPPERAGTDAYEAPADDTE
RALAAIWADVLAVERVGRNDNFFELGGHSLLAIQLLEQVRRLGWGAEVRTLFRKPRLADF
ALAVTEARDFARPEIEVPANGIPEGCTALSPEMLTLVKLDDAQLARIEAAVPGGAVNIQD
VYPLAPLQEGILFHHVLQSQGDAYITPCLLSFDSEARLLRFVESFNQVIARHDILRTAVH
WEQLEEPVQVVQRRAELRLQWLHEIEGEGDGEGAGKCSVAERLDACVDPSRYRIDVRRAP
MIRAVAAHDAEGERWLLQLPCHHLVMDHTTVELIIDEIALIQQDRHDELPVPMPFRRYVA
QARLGVSRAEHDDFFRRMLADVEEPTAPFNVLDVQGDGTGVEEVRLSLSDALSAQLRREA
QRQGVGTAALFHLAWALVLAKTTGRDDVVFGTVLFGRMQGGEGVERALGMFINTLPLRIR
IGGQGVAECLRQTHALLTDLVHHEHANLSQAQKCSGLAGGVPLFSALLNYRYTPKAVAGS
KAPSGWEGIEVIGGEERTNYPFSMAVDDQGTGFELAAQVVRGIGAQRFCDAMHAALRGLA
DALAQHPAQRAMSIDVLSAGERLGLQSLGHNTSRHADAKPVHRLIEQQVRARPDAIALVC
GAQALTYAQLNERANRLAHRLIASGVTSESKVGIAVSRNADMVAGVLAVLKSGAAYVPLD
PEYPQDRLAYMVEDSGLSLLLMQSHLLERLPDVPMLALDRLDLSGEPAHDPEVPLHAEHL
AYVIYTSGSTGKPKGVMVRHEALSHFIRSMQAAPGMTAEDVLVAVTSLSFDIAALELYLP
LSCGARIVLASQETVRDGRALAQLVEESGATLVQSTPAGWRLLRAAGWPAAPLHGFKGLC
GGEALQSDLAEDLHGLGVELWNMYGPTETTIWSSAQRVADGHPGIGEAIAATQLRVLDAD
LQPVPQGVAGELYIGGVGLARGYLHRPGLSAERFLADPFGTKGERIYRTGDMVRWSFDGR
LQYLSRVDHQIKIRGFRIELGEIETQLLAQPEVREAVVVAKEGPGGARLVAYVSLSSDTQ
PQLLKARISRALPEYMVPASIMVLPALPLNMNGKVDRKQLPDPEPSAEAAHEAPQGAVEE
ALAAIWHQVLGAEKKIGRHDNFFELGGDSILSLQIVTRAQRAGWTLTPRQLFEHQSIARL
ALVAQPVDGGHEENPREPRGRPQDFLPTDVLAGLPFAADEIEDIYPLAPTQEGMFFHSME
ASGSGLYVNQLSVEIGQVDPERFARAWEAMVARHAMLRTAFLWQAGMKRPLQLVLRHAPA
QAARVAQFDWRGSPDVRQRLAEHVQQELLRPVDWLQPPLARVSLIRLAEDRHQLVWTHHH
ILSDGWTDSRLLGEWLACYAGEMPLSALPEYGDYVRWLQRQDAGVAEAFWKSELALHDGP
TLLSEPNRDADAHEGFEKIYTRLSTEETAALQRFAQRERVTMNTLVQAAWALLLQRHTER
EHVIFGATVAGRPASLPGSEEMMGLFINTIPVAVSPQAHQTVGDYLRSVQERNLRAREYE
HSALADIQRWTGSAGRPLFDSIVVFENFPVDRAMKQLDRFGLQFGEVAGGGLTGYAMDLQ
VTMGDALEIEYCYARASFADEAVRAQRQQLEHLLRRMTTDAARPVGELGWLDAPLETAVL
ALGRTEHLRALDAQADRTMVHRLIEAQARLRPDAIALLLGDDEMSYAQLNARANRFAHHL
RELGVGPDRLVGVALERSLDTIVVLLAVLKAGGAYVPLDAAYPADRLAYMMRDSGAMLLI
TQRSVLPRLPETTVPRLLLDELAPDALGAPSDADPSPATGVDNLAYVIYTSGSTGMPKGV
AVTHGPLAMHCLATADIYGLNSHSCELHFMSFSFDGAHERWLTPLCVGAGLALRDNELWT
AEQTYEALHRYGVTTAAFPPAYLNQIADWAAPRDDAPPVELYVFGGEAMPKAAYDKVRTH
LKPRMLINGYGPTETVVTPLIWRTEASRTFDCAYAPIGRPVGERTAYVLDADMQPVPEGV
AGELYIGGYGLARGYLGRSALTAERFVADPFGGAGERLYRTGDLVRWMSDGNVEYLGRVD
NQVKVRGFRIELGEIEARLLAVTGVREAAVVTHDGAAGRQLVAYVVADGTEMQPQWPQQI
REQLGAQLPDYMVPAHVAVLPKLSRLVSGKLDRRSLPVPEAENPGRVHVPPSTPQAEQLA
QIWQQVLGVGQVGETDNFFELGGDSLLSLKVIAQVRRLRNPKLDFKLRDLMRWPTIGGLL
HATTAAAQPDSNLIALNGEAQGTGMPALFCIHAGMGTVFDYRLLARRLQGVRTVYGLPCR
SLTDPAHRDVSIAQMAADYCAMIRKVQPEGPVHLLGWSLGGTLAAAMAAWFEAQGQSVAF
LGLVDPYVPMEDVAPSQQVASGDEEGLQDFIDFVSIALPGAVAEPVLADGAGFALDEAAV
AAVLDALLSQMQGQAGQSDEADAVTGYAALGSQELARIFMVARQLKALSLRAGALPALRS
RVDCWWITGRLAAHRDALALQLDQPVPADRELALGHFEIVRSAELLEEIFAALAVARDSL
GPVARQHHEAA