Protein Info for GFF1632 in Sphingobium sp. HT1-2

Annotation: AmpG permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 119 to 142 (24 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 240 to 263 (24 residues), see Phobius details amino acids 276 to 299 (24 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 334 to 358 (25 residues), see Phobius details amino acids 369 to 392 (24 residues), see Phobius details amino acids 398 to 418 (21 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 357 (331 residues), 70.3 bits, see alignment E=7.4e-24

Best Hits

KEGG orthology group: K08218, MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (inferred from 92% identity to sch:Sphch_0662)

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>GFF1632 AmpG permease (Sphingobium sp. HT1-2)
MTELAGGTRSWSDAVKPYVQKEPLAAFFLGVSSGFPYAMIGATLTTRLAQDGIDKKAVTA
FTLAFLVYNLKWLWAWMVDGVRLPIIGRLGQRVSWLLLTGLLVMAAVANLALVDPTTGLL
QTAYAAILVGAAGATFDIVIDAYRIETLKPEQLGVGSGMSQYGWRIGSVAAGALALVLAA
RIGWHGAYLACAVFALPAMLTGLVLGEPERHREAAARRGMGEVWQSIAGPLVEFFRRRGA
VLVLCFILLHKIGDTLANLTFRLLFDDMGYSNDEIAIYDVGIGFWAYLIGIFVGGILYAR
LGMKRSVLISLVLMCVSNFSFAALAALGKSNWGMAGAIGFENFASGIGGVTVVAYFSALC
DLRFTAAQYALISAAASIVGRFLTGTTAGALIERFGYVDFYLLTTALAVPGILLFWLMMR
AGLIDASIGTAATADGDKASGSAA