Protein Info for GFF1627 in Variovorax sp. SCN45

Annotation: ABC-type siderophore export system, fused ATPase and permease components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 55 to 76 (22 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 241 to 265 (25 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details TIGR01194: cyclic peptide transporter" amino acids 8 to 552 (545 residues), 654.4 bits, see alignment E=7.4e-201 PF00664: ABC_membrane" amino acids 58 to 260 (203 residues), 34 bits, see alignment E=4e-12 PF00005: ABC_tran" amino acids 358 to 496 (139 residues), 88.6 bits, see alignment E=8.5e-29

Best Hits

KEGG orthology group: K06160, putative ATP-binding cassette transporter (inferred from 76% identity to dac:Daci_4746)

MetaCyc: 54% identical to ABC-type myristoylated ferribactin transporter (Pseudomonas aeruginosa PAO1)
7.4.2.-

Predicted SEED Role

"PvdE, pyoverdine ABC export system, fused ATPase and permease components" in subsystem Siderophore Pyoverdine

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>GFF1627 ABC-type siderophore export system, fused ATPase and permease components (Variovorax sp. SCN45)
MQTQPAGAKASDLLRLLKPFTPWIALSSVTGIGAGVATVALLATINEVLSRPGGMAGGLL
LTFVALCAVALVGRAISDISNNVVGQRLVAQVRKDLAQKILAAPIDALERYRMHRLMPVL
TQDVDMISDVAFMLAATMISLAIALGCLGYLAWLSLPLFGLLVVAMLIGVAVQTWAHGRG
IAGFFQSREQEELLHKAYRGISEGAKELRMHRARRAKVYEGQIARTVDNIRDINRRAINT
FVLATSFGSALFFLLIALILGWAAWRTTEPVVLSGFVLVLLFIKGPIDQIVGALPHLGRA
RVAFERIADLSARFATPEPHLHLGSPPTSPPLRNAIELRGVRYAFDTPEGSEAFVLGPVD
LQIGRSEIVFIVGDNGSGKTTLIKLLLGLYVPHQGEVVLDGKPVTPETRDDYRQLFTTVF
SDFYLFEDLVAGEEGGHQALPETALPYLQRLEIAHKVSVKDGAFSTTDLSTGQRKRLALV
HAYLEGRPVLVFDEWAADQDPTFRHLFYTELLPELRAKGHSLVVISHDDRYFHVADRIVH
MKAGRVAQDTKAPAQGLAA