Protein Info for GFF1602 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 TIGR03916: putative DNA modification/repair radical SAM protein" amino acids 3 to 396 (394 residues), 539 bits, see alignment E=4.6e-166 PF04055: Radical_SAM" amino acids 61 to 192 (132 residues), 32.4 bits, see alignment E=5.2e-12

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_3469)

Predicted SEED Role

"Elongator protein 3/MiaB/NifB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>GFF1602 hypothetical protein (Pseudomonas sp. DMC3)
MQIIDKLSILADAAKYDASCASSGAPKRSSEGKSGLGSTDGMGICHSYTPDGRCVSLLKI
LLTNFCLYDCQYCVNRRSSDVPRARFTPEEVVTLTMDFYRRNCVSGLFLSSGIIRSADYT
MEQLVRVAKLLREEHEFRGYIHLKTIPEADPALIEEAGRYADRLSVNIELPTDASLQTLA
PEKDITSIKQAMNTIYTGVQTVLNEPRSAKFAPAGQSTQLIVGADDTDDSTILHSAQSLY
GNFRLRRVYYSAFSPIPDSPKSVPLAAPPLMREHRLYQADFLLRSYGYSAEELLKGPGNL
ALDIDPKLAWALENREVFPLDLNRADATLIARIPGIGLRTTERLVELRRQRRIRYEDVAR
MRCVLAKAKPFIITSDYHPQQAEVTSHMLYQQLRDRPMPQQMGLWG