Protein Info for GFF1598 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Transcriptional regulator, AsnC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 PF13404: HTH_AsnC-type" amino acids 6 to 47 (42 residues), 49.6 bits, see alignment E=4.2e-17 PF13412: HTH_24" amino acids 7 to 53 (47 residues), 47.2 bits, see alignment E=2e-16 PF01037: AsnC_trans_reg" amino acids 76 to 149 (74 residues), 51.8 bits, see alignment E=9.5e-18

Best Hits

Swiss-Prot: 30% identical to GRP_ZYMMO: Glutamate uptake regulatory protein (grp) from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)

KEGG orthology group: None (inferred from 76% identity to pol:Bpro_0674)

Predicted SEED Role

"Transcriptional regulator, AsnC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>GFF1598 Transcriptional regulator, AsnC family (Hydrogenophaga sp. GW460-11-11-14-LB1)
MEPIDIDEADLRLLELLQADASRSNQALAELAHLSPPTSLRRVKRLRQLGLIEREVALLS
ADRLAPLLGHGLTALVEITLERQGAEHLDAFEARVLPTPEVQQCYRVSPGPDFMLVVHCV
DMPAYLALAQQLFTSDANVRNIKAFFSVKRAKFDPRLPLSRPRAAGGN