Protein Info for GFF1591 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 PF00355: Rieske" amino acids 14 to 97 (84 residues), 70.1 bits, see alignment E=1.2e-23 PF19112: VanA_C" amino acids 153 to 343 (191 residues), 138.7 bits, see alignment E=2.7e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (346 amino acids)

>GFF1591 Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MYPFEDGQTFPRNHWYIAACSDEVGRALFERQILGERLVFYRKADGTPVALDGTCPHRNL
PMAQGELEGDAVRCRYHGFRFEADGRCSDIPSQPTVPASFTTRAYPVVERWQWIWVWMGD
PAKVDAALLPDMEFAGLTAPGWRADSNGVVHLKARFSLLIDNLMDLSHIAYLHVQTIGRL
DRATVPAELTEADGRVHVVRCAPNQPAEGFHRFLHPTCNGPVDLTLRSDFLGPGLISAGG
PYSVMAATGAPVGRLNFVHGLTPETLHTTHYFPAVSRDFRLDDEGLSQALLKQERAVLAE
DIPALEQVELVVQRQGNTRRELSVLADAGAMRVRRRLIEMMKAEAL