Protein Info for GFF1584 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 41 to 376 (336 residues), 170.5 bits, see alignment E=1.3e-53 PF13433: Peripla_BP_5" amino acids 43 to 248 (206 residues), 42.6 bits, see alignment E=6.7e-15 PF01094: ANF_receptor" amino acids 65 to 256 (192 residues), 47.3 bits, see alignment E=2.4e-16

Best Hits

KEGG orthology group: None (inferred from 96% identity to xau:Xaut_1706)

Predicted SEED Role

"Extracellular ligand-binding receptor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (432 amino acids)

>GFF1584 hypothetical protein (Xanthobacter sp. DMC5)
MPSDGLRRPPSCSRRGLLAFAAVLFSAGTASAQTPAPAPATVSIGCVLPLSGGSASVGNQ
IKAGTQIAVDQINREGGIKSMGGAKLAVLFGDSQSKADIGVTETERLITRENVAALCGAF
NSAVTFPATEVAERYKTPWVVLGAVKDEITERNFKYVFRINNKANYDAREQVDAIDLLAQ
ESGKKPKTIALIYEGSDWGRSHAANVKKFAAERGYGVVLDEAAPPNQVDFSNQLLKVRAS
RPDVLIVAFYTPDHLILSRQLMDQRLDIPFGVHSVGGGTEDPAFYKAIAPRAVDYYFVQE
DFQIDIVEATKDPAILDADKRSKETLGYGLTAYSAQGLATIYVIRDALERAGSADREKLR
DALAATDITSGPALAAGYQRIKFDAQGQNTFAHGVISENLGGKRRTVWPKDNRLPDTKPV
WPVPEWSKRPNS