Protein Info for PS417_08055 in Pseudomonas simiae WCS417

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF03472: Autoind_bind" amino acids 27 to 175 (149 residues), 86.3 bits, see alignment E=1.5e-28 PF00196: GerE" amino acids 192 to 246 (55 residues), 55.6 bits, see alignment E=3.3e-19

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU1630)

Predicted SEED Role

"Transcriptional regulator ahyR/asaR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U923 at UniProt or InterPro

Protein Sequence (254 amino acids)

>PS417_08055 LuxR family transcriptional regulator (Pseudomonas simiae WCS417)
MLAKLTALNHRLMPGRSLDEQMDNTFILAQQLGFDALVYDYTPVPIDQDGALITPSVLAL
RNTPPDWHALWCSEGFYQIDPVQHLALSTVSPFVWSYDVKVDTPLQKIIDPCHAPVSSYL
HDQELTCGVSVPIHLPRGGFASLTGLRTGKARSVLQDVQQTLSDFSLISHALQEAAYPLF
SKELRTYPHIHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRV
QAVVRATHYRLLDD