Protein Info for PS417_07990 in Pseudomonas simiae WCS417

Annotation: endoribonuclease L-PSP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF01042: Ribonuc_L-PSP" amino acids 17 to 128 (112 residues), 87.8 bits, see alignment E=2.8e-29

Best Hits

Swiss-Prot: 31% identical to YJGH_ECOLI: RutC family protein YjgH (yjgH) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 75% identity to psp:PSPPH_2944)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UCA9 at UniProt or InterPro

Protein Sequence (130 amino acids)

>PS417_07990 endoribonuclease L-PSP (Pseudomonas simiae WCS417)
MTDRHLIIPATMQPIVERAGYVPAVKVGNTLYCAGQVGRTPQLAVIEDPEAQFIAAWGNL
REVLEEGGCRFEDVVDMTTYHVNMSQHMAVFRDVKNSLFPRGHCAWTTIGVSELAHPGLL
VEIKCVAVQR