Protein Info for GFF1558 in Variovorax sp. SCN45

Annotation: Uncharacterized ATP-dependent DNA helicase PA3272

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1457 PF00270: DEAD" amino acids 22 to 212 (191 residues), 98.5 bits, see alignment E=1.5e-31 PF04851: ResIII" amino acids 25 to 210 (186 residues), 22.7 bits, see alignment E=3.3e-08 PF22590: Cas3-like_C_2" amino acids 280 to 371 (92 residues), 28 bits, see alignment 9e-10 PF00271: Helicase_C" amino acids 280 to 374 (95 residues), 65.7 bits, see alignment 1.8e-21 PF19306: WH_Lhr" amino acids 402 to 564 (163 residues), 118.9 bits, see alignment E=6.2e-38 PF08494: DEAD_assoc" amino acids 636 to 838 (203 residues), 166.9 bits, see alignment E=1.9e-52 PF23235: WH3_Lhr" amino acids 1077 to 1144 (68 residues), 52 bits, see alignment 2.8e-17 PF23234: WH4_Lhr" amino acids 1292 to 1375 (84 residues), 91.8 bits, see alignment 6.5e-30

Best Hits

Predicted SEED Role

"Lhr-like helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1457 amino acids)

>GFF1558 Uncharacterized ATP-dependent DNA helicase PA3272 (Variovorax sp. SCN45)
VPLHSFHPAVARWFLRTFPSPTSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDEL
VRRGLEPGGLPDETAVVYVSPLKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRT
GDTPQRERQQSLRRPPHVLVTTPESLYVLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGS
HLALSLERLQARCLAHSGVRPVRIGLSATQKPIDEVARFLVGAGALRADGTADCAVVDIG
YAKQRDLALELPPTPLEAVMSGGQWTQVYARVAELVWLHKTTLVFVNTRRMAERTARHLG
DILGKEAVAAHHGSLSKETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPR
AIATFLQRAGRSGHAVGGVPKARLFPQSRDELVECAALLDCIRRGELDALRILPAPLDVL
AQQIVAETACREWNEEELFTLVRRAWPYAQLTRKSYMDVVRMVSEGFATPQGQRAGHVHR
DAVNHLLRERKGARMTALTSGGTIPETGDYTVVLEPQADKIGTVNEDFAIESLAGDVFQL
GNTSYRILKIEPGRVRVEDAHGVAPNIPFWLGEAPGRSDELSHGVSRLRAEVAQALEAGG
RDAAMRLLTQTFGLDEEAARQIVEHLAHAHAVLGTLPTQRTLILERFFDASGGMQLVIHS
PFGSRLNRAWGLALRKRFCRTFNFELQAAATEDAIVLSLSTSHSFPLDEVARYLHSSSAL
HVLVQALLDAPLFNVRWRWNATTALALPRFSGGRKVAPQLQRMRSEDLLAAVFPDQVACA
ENIVGERDVPEHPLVAQTLDDCLHDAMDADGWLSLLRRMESGEVRVIARDLPAPSPLAME
ALSARPYAFLDDAPLEERRTQAVQNRRYTDPESADDIGQLDADAIASVREEAWPQPRSAD
EMHEALGMLGALSDDEAACQGDWKPWLATLAKAGRATRLLCEGKGRAARGLWVTAERLRL
LQAVAPDAPIQPAITPPADVEQPTDREAALRELLRSRLGGLGPVTVEQLAAPLFLQPADV
ERALLALQTEGSVLQGRFTPGAADLEWCERHLLARIHRYTLKRLRREIEPVEPRDFMRFL
FAWQHIGAAARVRGPEALSGILSQLEGYEAPAPLWESELLPARVADYAGAWLDDLCTAGR
VLWTRLRPNATEGRKGAGSVSLRATPVVLLPRRSAALWTTLAPPPVDDEHLGSRAARVAA
HLAQHGACFFDEIAAGTRLLPVEIEEALTELVARGRARCDSYAGLRALLVPASKRASADA
RRRRRAPLFGIEDAGRWTLVRPPAATEAMAASSAEAIEQVVRVLLRRYGVICWRLLEREA
AWLAPWRDLVRVCRRLESRGEIRGGRFIAGVSGEQFALPEAVASMRQLRRQPGSGELVAL
AASDPANLLGTLMPGAKAPRVPGSRVAYLDGVPVATSVAGEVTMLVALDAAQKQSALRAL
SLDAPLRFSELAALQPG