Protein Info for GFF1546 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: ABC transporter protein IroC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1217 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 137 to 161 (25 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details amino acids 248 to 271 (24 residues), see Phobius details amino acids 283 to 306 (24 residues), see Phobius details amino acids 648 to 673 (26 residues), see Phobius details amino acids 687 to 709 (23 residues), see Phobius details amino acids 766 to 785 (20 residues), see Phobius details amino acids 791 to 809 (19 residues), see Phobius details amino acids 872 to 894 (23 residues), see Phobius details amino acids 904 to 922 (19 residues), see Phobius details PF00664: ABC_membrane" amino acids 29 to 296 (268 residues), 112 bits, see alignment E=1.7e-35 amino acids 653 to 922 (270 residues), 148.5 bits, see alignment E=1.3e-46 PF00005: ABC_tran" amino acids 357 to 510 (154 residues), 112 bits, see alignment E=1.4e-35 amino acids 983 to 1132 (150 residues), 102.1 bits, see alignment E=1.6e-32

Best Hits

KEGG orthology group: K06148, ATP-binding cassette, subfamily C, bacterial (inferred from 100% identity to stm:STM2774)

Predicted SEED Role

"ABC transporter protein IroC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1217 amino acids)

>GFF1546 ABC transporter protein IroC (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAALTPLITRQAVNDAIAGD
TTHLPLLACGLLLIALFDFIGNYVRRGYAGELSLWVQHTLRSRAFDSIQKLDGAGQDALR
TGQVISRTNSDLQQVHTLLQMCPVPLAVLTYYVAGIAVMLWMSPSMTLIVICVLAALAIT
ALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKSCVAELRETRWLDGQSRQMVRVR
IGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNGRIDLGTFVAFASFLAMLTGPTRVL
ASFLVIAQRTQASVERVFALIDTRSRMEDGTESVEGQIIGLDVEKMSFHYDNGNRILNEI
SFSIHAGETVAVVGASGSGKSTLLMLLARFYDPTSGGVWLNTTAGQQNIRDLKLTALRRR
VGVVFEDAFLFAGTVAENIAYGHPQATQDDIRRAADAAGASGFINALPQGFNTRLAERGS
NLSGGQRQRIALARALITAPELLILDDTTSAVDAGTEAEINTALGRYADNEHMLLVIARR
RSTLQLADRIVVLDKGRVVDIGTQAELDARCPTFRSLMSGEGDFLALAPAEQRTLWPTTQ
AVKSDDAHERQTPAGKGFVDRMTRVPERAVQMALAGHGRQVSSLLTPVAWMFVIAALLIA
LDSAAGVGVLVLLQRGIDSGVAAGDMSTIGICALLALCLVAIGWCCYALQTIFAARAAES
VQHTVRLRSFSHLLRLSLPWHEKHIDSRLTRMTVDVDSLARFLQNGLASAATSIVTMVAI
AAAMFWLDPILALTALSAVPVVMLATWIYRRLSSPAYAQARLEIGKVNSTLQEKVSGMRV
VQSHGQQQQEAARLRALSDNFRATRVRAQKYLAVYFPFLTFCTEAAYAAVLLIGASRVAG
GEMTPGILAAFFLLLGQFYGPVQQLSGIVDSWQQATASGKHINALLATEETENIEPSSIT
PGTGALRLEALTFLYPEKTQPVLDNLSLIIPPGTVVAVVGRSGAGKSTLIKLLAGLYSPG
SGQIRVGERLIDAASLSDYRRQTGLVTQDVALFSGDIAENIRYPRPDSSDTEVESAARRA
GLFETVQHLPLGFRTPVNNGGTDLSAGQRQLIALARAHLAQAHILLLDEATARIDRSAEE
RLMTSLTRVTHTEKRIALIVAHRLTTARRCDVIVVIDKGCIAEYGSHEQLIAAHGLYARL
WRNSIGQTRDTQGEVIG