Protein Info for GFF1542 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Flagellar biosynthesis protein FliC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 PF00669: Flagellin_N" amino acids 5 to 143 (139 residues), 149.6 bits, see alignment E=1.2e-47 PF08884: Flagellin_D3" amino acids 197 to 285 (89 residues), 83.7 bits, see alignment E=2e-27 PF21504: FLIC_barrel" amino acids 358 to 401 (44 residues), 66.1 bits, see alignment 4e-22 PF00700: Flagellin_C" amino acids 420 to 505 (86 residues), 113.8 bits, see alignment E=7.8e-37

Best Hits

Swiss-Prot: 100% identical to FLJB_SALTY: Phase 2 flagellin (fljB) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02406, flagellin (inferred from 100% identity to stm:STM2771)

Predicted SEED Role

"Flagellar biosynthesis protein FliC" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>GFF1542 Flagellar biosynthesis protein FliC (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKG
LTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRL
NEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDSLNVQKAYD
VKDTAVTTKAYANNGTTLDVSGLDDAAIKAATGGTNGTASVTGGAVKFDADNNKYFVTIG
GFTGADAAKNGDYEVNVATDGTVTLAAGATKTTMPAGATTKTEVQELKDTPAVVSADAKN
ALIAGGVDATDANGAELVKMSYTDKNGKTIEGGYALKAGDKYYAADYDEATGAIKAKTTS
YTAADGTTKTAANQLGGVDGKTEVVTIDGKTYNASKAAGHDFKAQPELAEAAAKTTENPL
QKIDAALAQVDALRSDLGAVQNRFNSAITNLGNTVNNLSEARSRIEDSDYATEVSNMSRA
QILQQAGTSVLAQANQVPQNVLSLLR