Protein Info for PS417_07830 in Pseudomonas simiae WCS417

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 PF13007: LZ_Tnp_IS66" amino acids 45 to 118 (74 residues), 50.6 bits, see alignment E=5.2e-17 PF13005: zf-IS66" amino acids 125 to 167 (43 residues), 54 bits, see alignment 3.6e-18 PF03050: DDE_Tnp_IS66" amino acids 181 to 462 (282 residues), 356.2 bits, see alignment E=2.8e-110 PF13817: DDE_Tnp_IS66_C" amino acids 469 to 506 (38 residues), 59.3 bits, see alignment 6.9e-20

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a745)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UC78 at UniProt or InterPro

Protein Sequence (511 amino acids)

>PS417_07830 transposase (Pseudomonas simiae WCS417)
MTSSPNLDQMTPEQLRALAEQAIQLLSQVDSMGQKIHRLETVNEQLAHEIAILKRHKFAK
RSEQLSPDQGSLLDDLLDADIAAIEAELNAVNPRPAPTEPRQKPKRAPLPPKFPRTVIRH
EPENTQCTCGCQLQRIGEDVSEKLDYTPGVFTVEQHVRGKWACRQCETLIQAPVPAQVID
KGIPTAGLLAHVMVAKFADHLPLYRQEKIFGRAGLMIARSTLAQWVGQTGVQLQPLVDAL
REAVLAESVIHADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHAR
NFLGAWNGKLVCDDFAGYKAGFEKGMTEIGCMAHARRKFFDLHVANKSQLAEQALHSIGG
LYEVERQTRDMSDEDRWRIRQEKAAPIIATLHDWMLAQRDLVPNGSATAKALDYSLKRWV
ALTRYLDDGAVPIDNNPVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARLNGHD
PYAYLKDVLTRLPAQRASEIGQLLPHQWRPA