Protein Info for GFF1531 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 PF12831: FAD_oxidored" amino acids 46 to 462 (417 residues), 259.1 bits, see alignment E=1.5e-80 PF13450: NAD_binding_8" amino acids 49 to 85 (37 residues), 26.9 bits, see alignment 7.3e-10

Best Hits

KEGG orthology group: None (inferred from 62% identity to vap:Vapar_3215)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (484 amino acids)

>GFF1531 hypothetical protein (Variovorax sp. SCN45)
MGTLTPAERHFFRSDVNARDSQRRQRQPQGHVTEPARETPVHERCDVLVLGAGPSGVAAA
VAAARGGARVVLLERYNHLGGLSTGGLVIWIDRMTDWSGGHVIHGLAAEIMDRLGRSAQP
AVAGPRREDWGSRDSAKADYWSLRTAAFHGVVTHSPTIDPEMLKGVYHQMVREAGVDLIL
HGWMVAPIAEEGRVKGAVFESKQGRRAILANVVVDTTGEGDLYAAAGAAYASDIDAHDIH
HCINTSWLFAGVDMRRWLDFRAHEPQAYSALLARGRETLGSFEKPIVSWRDDVATFLGPR
KSGFSALDVDEMTQVEWESRKSMAEHLAFYRAHAPGFENAWVMLMAPQIGTRHGRRLVGV
KSVRRGAWDEGAVEPDEIGISPSPSPKFPNISVPYGALVPEKLDGVLAAGKHISCDTNSH
GFMREIPQCWLTGQAAGTAAALAADSGVLPRDVDVKRLQALLMAQGVPLRQVTNRVAQAS
ATAL