Protein Info for GFF1509 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: ATP synthase F0 sector subunit c

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 79 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 51 to 74 (24 residues), see Phobius details PF00137: ATP-synt_C" amino acids 9 to 70 (62 residues), 41.8 bits, see alignment E=5.3e-15 TIGR01260: ATP synthase F0, C subunit" amino acids 19 to 73 (55 residues), 55.3 bits, see alignment E=2.6e-19

Best Hits

Swiss-Prot: 64% identical to ATPL_AZOSB: ATP synthase subunit c (atpE) from Azoarcus sp. (strain BH72)

KEGG orthology group: None (inferred from 60% identity to vpe:Varpa_0386)

Predicted SEED Role

"ATP synthase F0 sector subunit c"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (79 amino acids)

>GFF1509 ATP synthase F0 sector subunit c (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSDLNTLPLAVGHMIGLGALGSCIGIGLMASRYLEASARQPEMMDALQPKVFLLAGLLDG
AFIISVALGVWFALAAPFA