Protein Info for GFF1504 in Variovorax sp. SCN45

Annotation: Alkylhydroperoxidase AhpD domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 TIGR01926: uncharacterized peroxidase-related enzyme" amino acids 213 to 387 (175 residues), 197.9 bits, see alignment E=1.2e-62 PF02627: CMD" amino acids 256 to 331 (76 residues), 46.3 bits, see alignment E=1.8e-16 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 269 to 298 (30 residues), 36.7 bits, see alignment (E = 2.3e-13)

Best Hits

KEGG orthology group: None (inferred from 65% identity to aav:Aave_4506)

Predicted SEED Role

"Alkylhydroperoxidase AhpD domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>GFF1504 Alkylhydroperoxidase AhpD domain protein (Variovorax sp. SCN45)
MTDSQLSVDLVDASVPLAEGSAVHAVRHQRDKVVAATQGSYEALFDPALSGPPLVERLLA
AHAIARSAGSAALQAHYRARLDALAPLSAAQQAAADGAPVESLDADPRLQAVLAFTRTLT
DRPVEGDREALLKLPAAGLATPEAVALAQLIAFVAYQVRVVAGLQALAALGGDSVATAVE
ENTAPFVHPANLPPPGEPLRINGYTSETLGWKAWLPVIDLAQASAEQVRVLDSSHPKARS
SDYYLLLVHQPRILQERATVFNAIMYAPGGLSRAERELASAVVSRINGCVYCASVHAQRF
EQLARRNDVIAQVFTEPETAGTTARERAIVQLSIALTRNPAAFGAEQLHAVRAAGLTHLE
ILDTIHAVAIFAWANRLMLNLGEPVFPARD