Protein Info for GFF1502 in Sphingobium sp. HT1-2

Annotation: FIG137776: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 TIGR03087: sugar transferase, PEP-CTERM/EpsH1 system associated" amino acids 5 to 397 (393 residues), 452.4 bits, see alignment E=7.9e-140 PF13579: Glyco_trans_4_4" amino acids 25 to 207 (183 residues), 33.9 bits, see alignment E=8.2e-12 PF13692: Glyco_trans_1_4" amino acids 228 to 365 (138 residues), 104.1 bits, see alignment E=1.6e-33 PF00534: Glycos_transf_1" amino acids 228 to 378 (151 residues), 27.4 bits, see alignment E=4.5e-10 PF13524: Glyco_trans_1_2" amino acids 253 to 388 (136 residues), 35.7 bits, see alignment E=1.7e-12

Best Hits

KEGG orthology group: None (inferred from 81% identity to sjp:SJA_C1-15080)

Predicted SEED Role

"FIG137776: Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>GFF1502 FIG137776: Glycosyltransferase (Sphingobium sp. HT1-2)
MTGELLFLCHRIPFPPDRGDKIRSYHLLQRLAQMAPVHVGCFADDDRDMGFAPDMAQLTA
SQCVLMRDRSRIVAGLTGLARGQSLLVSLFDHPGLHRWVAQVMAERPIRAVIAYSAQMAH
FVPMLPAGVRFLMDFVDFDSAKYAAYGAQGSGPMGWINRREGRVLLDFERKVATRADICS
FVSEAEAALFRDACGLGPDRIVALENGVALDYFDPAADFPAVDKGAGPLIVFTGQMDYRP
NVEAVESFARQTLPAIRSARPDARFAIVGRNPSKSVQALADLPGVIVTGGVPDVRGWLAA
ADLVVAPLRIARGIQNKVLEAMAMARPVVASSQAAEGIDAVDGRDFLVADDPAAEAQAVL
WLLADPARGTQLGLAARRRVENRYRWSATLGGLPDLLLGAPGKADPQAA