Protein Info for PS417_00755 in Pseudomonas simiae WCS417

Annotation: biofilm PGA synthesis protein PgaD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 52 to 76 (25 residues), see Phobius details TIGR03940: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD" amino acids 5 to 135 (131 residues), 81.6 bits, see alignment E=2.6e-27 PF13994: PgaD" amino acids 7 to 131 (125 residues), 73.8 bits, see alignment E=7.7e-25

Best Hits

KEGG orthology group: K11937, biofilm PGA synthesis protein PgaD (inferred from 91% identity to pfs:PFLU0146)

Predicted SEED Role

"Biofilm PGA synthesis auxiliary protein PgaD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0M3 at UniProt or InterPro

Protein Sequence (160 amino acids)

>PS417_00755 biofilm PGA synthesis protein PgaD (Pseudomonas simiae WCS417)
MKLVRTRQRMVMWIIDVLLTLMAWAGLIWLLARGINSMLETHGGPRIEAPIFAALNTLQI
YLWIALFNALILISWARYQQRRGRKFAQRRAEAKALSDQNLSESFSLGEGDLEQLRRPGV
LVIHNDEEGGVAEVKSHVSRDVEKPGLTLVPGKDQNKDAS