Protein Info for PS417_07495 in Pseudomonas simiae WCS417

Annotation: ATPase AAA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 PF13401: AAA_22" amino acids 27 to 133 (107 residues), 32 bits, see alignment E=3.5e-11 PF07728: AAA_5" amino acids 28 to 172 (145 residues), 49.5 bits, see alignment E=1.1e-16 PF00004: AAA" amino acids 29 to 177 (149 residues), 49.5 bits, see alignment E=1.5e-16 PF07724: AAA_2" amino acids 30 to 165 (136 residues), 40.9 bits, see alignment E=5.9e-14

Best Hits

KEGG orthology group: None (inferred from 97% identity to pst:PSPTO_3905)

Predicted SEED Role

"ATPase associated with various cellular activities, AAA_5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U135 at UniProt or InterPro

Protein Sequence (281 amino acids)

>PS417_07495 ATPase AAA (Pseudomonas simiae WCS417)
MKFEGTQAYVATDDLKLAVNAAITLERPLLVKGEPGTGKTMLAEQLAESFGAKLITWHIK
STTKAHQGLYEYDAVSRLRDSQLGVDKVHDVRNYLKKGKLWEAFESEERVILLIDEIDKA
DIEFPNDLLQELDKMEFYVYEIDETIKAKKRPIIIITSNNEKELPDAFLRRCFFHYIAFP
DRTTLQKIVDVHYPDIKKDLVSEALDVFFDVRKVPGLKKKPSTSELVDWLKLLMADNIGE
AVLRERDPTKAIPPLAGALVKNEQDVQLLERLAFMSRRGNR