Protein Info for GFF1471 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 166 to 189 (24 residues), see Phobius details amino acids 202 to 222 (21 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 272 to 295 (24 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 335 to 355 (21 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 405 to 426 (22 residues), see Phobius details amino acids 453 to 472 (20 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 413 (393 residues), 160.2 bits, see alignment E=3.4e-51

Best Hits

KEGG orthology group: None (inferred from 78% identity to vap:Vapar_5625)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (484 amino acids)

>GFF1471 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MNEVVKEDEERAAWTVLVVASLGAFLCFLNLSALNVALPLVARSLNASPSQASWILLSYM
LVSTVCILSFGRLADLWGRRRLFLAGLGLFLIACAGCAAATSFGAMLFFRVCQAVGAAGV
MANSSALVGDAFGRKKVGLALGVLAMVAALAQVAGPLAGGFVVSWWGWRVLFMLNVPIGL
CVLAWSWKTLPESTATAITERFDLAGALMSLAGIGSVIYALSMVGTRGWASVPVWVFMLA
GVCAIVVFVRVQQRAASPLVDPALFRDPGRCTAYACILLLSMSQAAPLLLVALYLQACAG
LAPSEAGTRIAPVALGMLMAAPMAGSLMRRFTPEVLCVAGMLIAAGALALLAAMLQPAIG
TGQLAACLWMLGLGIGSFVTPNNASILQSVVPQRRGIANGVRATLQNTGIMMGTALTLSV
AMAQLPYSSQLMILGNGNSALAAVDIAAFTEGARAAFAMLACLCLMGAALIAKNCRTAWA
GQPV