Protein Info for GFF1446 in Xanthobacter sp. DMC5

Annotation: Maleylacetate reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 220 to 238 (19 residues), see Phobius details PF00465: Fe-ADH" amino acids 11 to 153 (143 residues), 94.6 bits, see alignment E=8.1e-31 PF13685: Fe-ADH_2" amino acids 16 to 158 (143 residues), 37.5 bits, see alignment E=3.5e-13 PF25137: ADH_Fe_C" amino acids 166 to 347 (182 residues), 154 bits, see alignment E=6.1e-49

Best Hits

Swiss-Prot: 57% identical to TFTE_BURCE: Maleylacetate reductase (tftE) from Burkholderia cepacia

KEGG orthology group: None (inferred from 86% identity to azc:AZC_1411)

MetaCyc: 56% identical to maleylacetate reductase (Rhizobium sp. MTP-10005)
Maleylacetate reductase. [EC: 1.3.1.32]

Predicted SEED Role

"Alcohol dehydrogenase (EC 1.1.1.1)" in subsystem Fermentations: Mixed acid or Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 1.1.1.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.1.1

Use Curated BLAST to search for 1.1.1.1 or 1.3.1.32

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (362 amino acids)

>GFF1446 Maleylacetate reductase (Xanthobacter sp. DMC5)
MIETFTYEALPIRVRFGRGTVAEVGAEVARLGARRALMLTTPQQAGEGERIGGLIGEACA
GVFPGATMHTPVEVTEQALNALKAADADCVVALGGGSTTGLGKALALRTGVPQLVIPTTY
AGSEMTPILGETQDGRKTTIRSLDVLPEAVIYDVDLTLTLPAGLSATSGVNAIAHAVEAL
YARDRNPVISLMAEDGIRTLSSALPILIHEPANIEARTMALYGAWLCGCCLGAVGMALHH
KLCHTLGGTFNLPHAETHTIVLPHAVAYNAPAAPEAMAAITRALGAPDAAQGLFDLVRAL
GVPRALSEIGMPADGIDTAADIAVENPYWNPRPVTRDGIRALIARAYAGERPVAAERAEE
AA