Protein Info for GFF1443 in Variovorax sp. SCN45

Annotation: Excinuclease ABC subunit A paralog of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 877 PF17755: UvrA_DNA-bind" amino acids 163 to 274 (112 residues), 47.6 bits, see alignment E=2.8e-16

Best Hits

KEGG orthology group: K03701, excinuclease ABC subunit A (inferred from 74% identity to bpy:Bphyt_3073)

Predicted SEED Role

"Excinuclease ABC subunit A paralog of unknown function" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (877 amino acids)

>GFF1443 Excinuclease ABC subunit A paralog of unknown function (Variovorax sp. SCN45)
MQDSNDRSDRFVRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRR
YFESVAPYARRLIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLY
SRAGDYPARQPMLYAEDFSPNTPQGACPTCHGLGRVFEVTEQSMVPDDSLSIRERAIAAW
PPAWHGQNLRDILVTMGIDVDKPWRNLPKKTRNWILFTEEQPTVPVYAGFTPAETRAAVR
SKMEPSYQGTFMGARKYVLHTFATTHSALMKNRAARFMVGGDCPQCHGKRLKREALSVRF
AGHDIGEIARMSLARLADVLRPVARGESPGAAAPVATRRASLRQAAPGKGASHASAPDVR
RTPNQSAEKRIAAQRIAHEMLERVTTLLELGLGYLSLDRSTPTLSPGELQRLRLATQIRS
NLFGVVYVLDEPSAGLHPADGEALVLALDTLKRSGNSLFVVEHDLDLMRRADWLVDVGPD
AGEKGGLVLYSGPPEGLRHVAQSHTARYLFSAHAGPVRPPRTPRGWLKLEGLTRNNLSNL
AAAFPLGVLSAVTGVSGSGKSSLVSQALVELVAAHLGHEPPPAEEEEGEEPAALASRTSG
HIVQGMEGIRRLVRVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTRAAKARRFDPGRFSF
NVAKGRCPTCEGEGFVSVELLFMPSVYAPCPACHGSRFNAQTLSVRLRDRTIADVLAMTV
DEAHTFFEADVAIERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTL
YVLDEPTTGLHPADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGG
RIVASGAPSDVARSKKSRTAPYLARWTSPAHRETQRP