Protein Info for GFF1433 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 38 to 64 (27 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 164 to 186 (23 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 271 to 299 (29 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 365 to 388 (24 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details PF07690: MFS_1" amino acids 43 to 369 (327 residues), 120.1 bits, see alignment E=1.1e-38 PF00083: Sugar_tr" amino acids 70 to 464 (395 residues), 144.8 bits, see alignment E=4e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>GFF1433 hypothetical protein (Variovorax sp. SCN45)
MAHVSARLDPASFSHMPTGDTSASLYDRDTLTPRQKFVVGVSAFAQMVDFLDFFLISFVI
TYIVGPWQLSVGQTTIILLSAGIGASFGSFICGAIADRVGRRPVFLCTIALFTLCTGALA
LIPDGAWIWLTVLRFFVGFGATGMYSTNIPLLQEFMPTKKRSFATGLVASFIPVGVMLGS
AIVFLFGTAVGWRGLFGIGFALGALLLAVGWRVPESPLWFISKDERARARRSLAWALDES
EDRVVVPAKAQDQPADRVTVRELFQYPRKVIVSWVSILGSQVAYYGLTLWAPALLVAILH
TTPSHAAFLLIFCNLADMGARLIFAYVSERAGRRLIGILQGFVGAALLVATSLTANAFIG
GVSVFWLLLMATYFFVSGGFSVTVPYVAEIWPSRLRATGLGSAYGVGSLGKIVGPLGLGL
VLGTSKVTVDAVFPAFCYLAAFLLLTGIVFLWLAEETRGRRFEDAA