Protein Info for GFF1430 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 761 PF07603: Lcl_C" amino acids 438 to 608 (171 residues), 69.2 bits, see alignment E=1.9e-23 amino acids 630 to 760 (131 residues), 52.5 bits, see alignment E=3e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (761 amino acids)

>GFF1430 hypothetical protein (Variovorax sp. SCN45)
VAAARAAEPHSRVAFNDRRRAAIGFPNAPAPLPAEDRSAHAGLPRSSHCREVRDARGGKN
GDQPARDEHGARAAQRGPARSPPRSNGPRDGADTSGRGARRRRALSPSRTHRRVDGERTL
RPHDGTGERQYRYDRFHGRAASSARAGASSARGTGHPHSCSFAGPEPHTGVAGGRRMRHC
HRPFPGSGRRTEGFGTLRGPVELHRQPDTSDDPWNPQPRPVHGVFSHRVRVTVCSDLHRG
PGHRSRPVCVGSGEESKRAAGFHPAPAACRGANRPDRHDANAACEVLFEHPARARVRSSL
RNSRSSLLSGLARKNASHGAPSLRAQPRTRYRDQSRRNPANRTVTSRPLHALTTAILVAG
FLATPAAAQLRAASAGPATVKVPPTGARVCVGLQQDGWPAPQACSEAGPLTLISKQDGML
RAGEPDYEAIAGQPLTSCVRDRVSGLIWEGKPDSGKLAWMRTQAGPKGTGMLTDTYGPHN
HPAPGSRANTDAYSYHGDGRPGDAMAYVAQVNAMGLCGFTDWRLPTVAELHGLVDLGELV
DARSTQWPAERAAVDGRWLPNTVPGNYLSAEPDDENRMWCVSFAAGFVYSCNRRMERKPQ
PLFVRLVRGPQVPETGRWREVPDKHGVPGGVVEDRYTGLAWRRCEEPQAWNGERCTGTAR
RYDYVQALQLASAQTGWRLPTIKEVNSLAERWFKKQDIPAADFPSSGTQPLHEGYWSSTV
CSGGSATPQARAWIRGWALGNGGDISCEARLMRLGVRLVRE