Protein Info for GFF1424 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Annotation: NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to APHA_SALTM: Class B acid phosphatase (aphA) from Salmonella typhimurium
KEGG orthology group: K03788, acid phosphatase (class B) [EC: 3.1.3.2] (inferred from 100% identity to stt:t4155)MetaCyc: 89% identical to acid phosphatase / phosphotransferase (Escherichia coli K-12 substr. MG1655)
RXN0-3741 [EC: 3.1.3.89]; 3'-nucleotidase. [EC: 3.1.3.89, 3.1.3.6]; 5'-nucleotidase. [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5]; Deoxynucleotide 3'-phosphatase. [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34]; 3.1.3.34 [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34]; 3.1.3.34 [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34]; 3.1.3.34 [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34]; 3.1.3.34 [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34]; Phosphoserine phosphatase. [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34, 3.1.3.3]; Acid phosphatase. [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34, 3.1.3.3, 3.1.3.2]; 3.1.3.2 [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34, 3.1.3.3, 3.1.3.2]; 3.1.3.- [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34, 3.1.3.3, 3.1.3.2]; RXN-14534 [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5, 3.1.3.34, 3.1.3.3, 3.1.3.2]
Predicted SEED Role
"NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2)" (EC 3.1.3.2, EC 3.1.3.5)
MetaCyc Pathways
- superpathway of sulfate assimilation and cysteine biosynthesis (9/9 steps found)
- superpathway of L-serine and glycine biosynthesis I (4/4 steps found)
- L-serine biosynthesis I (3/3 steps found)
- phosphate acquisition (1/1 steps found)
- inosine 5'-phosphate degradation (3/4 steps found)
- purine nucleotides degradation II (aerobic) (8/11 steps found)
- UTP and CTP dephosphorylation I (5/7 steps found)
- NAD salvage pathway III (to nicotinamide riboside) (2/3 steps found)
- adenosine nucleotides degradation II (3/5 steps found)
- adenosine nucleotides degradation I (5/8 steps found)
- guanosine nucleotides degradation I (2/4 steps found)
- guanosine nucleotides degradation II (2/4 steps found)
- guanosine nucleotides degradation III (2/4 steps found)
- ureide biosynthesis (4/7 steps found)
- superpathway of guanosine nucleotides degradation (plants) (3/6 steps found)
- purine nucleotides degradation I (plants) (7/12 steps found)
- NAD salvage (plants) (5/11 steps found)
- superpathway of purines degradation in plants (10/18 steps found)
- tunicamycin biosynthesis (2/9 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Glycine, serine and threonine metabolism
- Nicotinate and nicotinamide metabolism
- Purine metabolism
- Pyrimidine metabolism
- Riboflavin metabolism
- gamma-Hexachlorocyclohexane degradation
Isozymes
Compare fitness of predicted isozymes for: 3.1.3.2, 3.1.3.3, 3.1.3.5
Use Curated BLAST to search for 3.1.3.2 or 3.1.3.3 or 3.1.3.34 or 3.1.3.5 or 3.1.3.6 or 3.1.3.89
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (237 amino acids)
>GFF1424 NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868) MKKITLALSAVCLLFTLNHSANALVSSPSTLNPGTNVAKLAEQAPVHWVSVAQIENSLTG RPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEVAR QLIDMHVRRGDSIYFVTGRSQTKTETVSKTLADNFHIPAANMNPVIFAGDKPEQNTKVQW LQEKNMRIFYGDSDNDITAARDCGIRGIRILRAANSTYKPLPQAGAFGEEVIVNSEY