Protein Info for GFF1412 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Flagellar hook protein FlgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 386 (386 residues), 321.9 bits, see alignment E=4e-100 PF00460: Flg_bb_rod" amino acids 6 to 31 (26 residues), 30 bits, see alignment (E = 6.1e-11) PF07559: FlaE" amino acids 182 to 285 (104 residues), 58.4 bits, see alignment E=1.8e-19 PF06429: Flg_bbr_C" amino acids 325 to 403 (79 residues), 69.8 bits, see alignment E=2.5e-23

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 55% identity to dac:Daci_0630)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>GFF1412 Flagellar hook protein FlgE (Hydrogenophaga sp. GW460-11-11-14-LB1)
MAFQQGLSGLNSASRNLDVIGHNIANANTVGMKSSRGEFGELYASSVNAAGGVNSGIGVA
LTTVSQHFTQGNITVTGNDLDVAINGSGFFELNMPNGTVAYSRAGMFKLDSSGNIVTNGG
ANLMGYPTSPDGTRLSFDSQPLRLPTGGPIPARQTTRILAEFNLDARAPVASTQTPPTPL
STYGTSLIAYDPQGVEVPVALSFEKIGNNQWNVYTGVNGADPALSTPFVVNFLTDGSLDP
ASVIPQLTLTSPNDPAVTFNVDLDFGNATQYGTNFAVSDLDQDGYRPGQFIGLKIGEDGM
VSGQYSNGETRAAGQIALVNFRNTQGLQPMGGGNWTATFTSGDPLHGEPGTGNFGALRSG
ALEDSNVDITAELVNMMTAQRTYQANAQTIKTQDQVLSTLLNMR