Protein Info for GFF140 in Variovorax sp. SCN45

Annotation: Putative transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 37 to 54 (18 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details TIGR01297: cation diffusion facilitator family transporter" amino acids 9 to 297 (289 residues), 145.9 bits, see alignment E=7.8e-47 PF01545: Cation_efflux" amino acids 11 to 215 (205 residues), 126.8 bits, see alignment E=9.6e-41 PF16916: ZT_dimer" amino acids 222 to 294 (73 residues), 31.2 bits, see alignment E=1.9e-11

Best Hits

KEGG orthology group: None (inferred from 86% identity to vpe:Varpa_2973)

Predicted SEED Role

"Cation transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>GFF140 Putative transport protein (Variovorax sp. SCN45)
MAESKIAIYGAIGANVAIAVTKFVVAGITGSSAMLSEGIHSAVDTFNGVLLLVGLRLSKR
PATVEHPFGHGKELYFWSLIVAVLIFGLGGGVSFFEGIQHIRNPEPMRDPTWNYVVLAAA
ALFEGTSFFIALKEFRAQARGQPFWQALDRSKDPTTYTVLAEDSAALAGLAVAALGIYFS
HSLGMPELDGVASVVIGLLLAGVAVFLISQARGLLIGEGIRPETARAIRAIAMEQPGVED
VGHVLSMYIGADEVLVVVDVNFRDDTSTGDAADAVAAIERQVRARFPMIKRIFIEASDAP
GQDKATQRQPGAF