Protein Info for GFF1376 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: putative inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 48 to 64 (17 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 125 to 150 (26 residues), see Phobius details amino acids 162 to 191 (30 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 312 to 332 (21 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details PF19528: DUF6056" amino acids 9 to 399 (391 residues), 211.5 bits, see alignment E=1e-66

Best Hits

KEGG orthology group: None (inferred from 99% identity to seh:SeHA_C4541)

Predicted SEED Role

"putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>GFF1376 putative inner membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MLKILPKTAMILLAFLAIFLIEWYTPIHSDDYRYYLLGISPESHFHHYMTWSGRIIADYT
SALILYTRSQLVYSISAAVSTLVFCYFIVKTPSGTLRWNKSDYLLFPLIFFTYWISNPNL
GQTTFWIVGAANYLWTNLFVVAWLFFFYTITIKNSKAISPWVALLSFMAGCSNESVSPFV
SLISVLAIAYELWQNKSVSRNKIVYSLCAIAGSCVLILSPGNFIRASGKEFWYGRPIFER
IFIHLTERVHNHLALIWIAYVVLLLLVLLVIFNKQIRAKIDKTSLICAALVVCIGIGTSL
IMFASPSYPDRVMNGTFMFFLLAISFIAYALLKSGVKAGVVGVTAVTVLCGIVFLWSYSL
MLNGYKKTAGQEIVRQKIITKEIAAGKQKFIIPDYYFVKLQNSGGHFGLFHDPAVYGEYY
HVQAIFKKKVNFDYSVIANGAKHSLSNETTAYSNTRGDFAIISREQLTGSITLSVNGRQK
TIPVEKMKHAEINDEFWYYASVDKGEITAISF