Protein Info for GFF1374 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 32 to 46 (15 residues), see Phobius details amino acids 53 to 74 (22 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 110 to 136 (27 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details amino acids 292 to 313 (22 residues), see Phobius details amino acids 318 to 340 (23 residues), see Phobius details amino acids 352 to 374 (23 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 368 (345 residues), 108.6 bits, see alignment E=3.2e-35 PF05977: MFS_3" amino acids 45 to 404 (360 residues), 90.5 bits, see alignment E=9e-30

Best Hits

KEGG orthology group: None (inferred from 85% identity to vap:Vapar_2902)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>GFF1374 hypothetical protein (Variovorax sp. SCN45)
MTSTTTPTPTTPLPRAFLNLAWSNLAAQSAEQLSLAAVPLVAVLALQAGPGEIGFLAAIQ
TLPFLLVSMPLGLLADRMSRRRLMVWAEGLRAVSLLMLLALVFWSKLGIAWLAVLGFLGA
VGTVGFSVAAPALVPALVPRDALAVANERLELARSAAFTGGPALAGALVAWAGASAAFVL
AAVLSVSAVGLLLSLREAPLAHVASRRNPLLDVRDGARFVWRHELLRPMLMTGAVFNISW
FVLQAAYVPYAVRVLGLGAQAVGFTLAMYGAGMVFGALLTARVVARMPFGRAIQIGPAAA
VVAGALMAGTLVVPSAALASLSFFLFGAGPMVWVITSATLRQSVAPPAMLGRVSAVFLTI
NTGARPIGAALGGLVGATQGESACLLLALAGFALQAGIIFASRIATLRRLPALAAT