Protein Info for GFF1368 in Sphingobium sp. HT1-2

Annotation: Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 PF02771: Acyl-CoA_dh_N" amino acids 9 to 128 (120 residues), 41.3 bits, see alignment E=2.8e-14 PF02770: Acyl-CoA_dh_M" amino acids 132 to 225 (94 residues), 69.9 bits, see alignment E=2.7e-23 PF00441: Acyl-CoA_dh_1" amino acids 237 to 388 (152 residues), 61.1 bits, see alignment E=2.1e-20

Best Hits

KEGG orthology group: None (inferred from 82% identity to sch:Sphch_0989)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>GFF1368 Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8) (Sphingobium sp. HT1-2)
MAEMEPIDREEFRQEARAWLKANFPPALTNVPGLIFQGDAHAAAANADYQLWRQRMTDKG
WGVPTWAPRYGGAGLTEAHGKIIGEELAAIGGFNPIRSYGTMMLGPTLLEYGDEAQKLEH
LPFIASHERRWCQGFSEPGAGSDLAALQTKCIDMGDHWLVSGQKIWTSGADQADWCFVLV
RTDTERKQGGISFLLVDMQSEGIEARPIVLISGSTHFCEVFFNDVKVPKGNLVGEVNQGW
TIAKRLLQFERNSLSEVKADITPLAPLAHDYLGTDALGRIDSPDLRARLVRNAMRHEAYM
ATVRRLAAEAKNGGPSHGVSALKNLWSGIIQERAELLVEIMGADGLGWAGDPYSAAEKEA
TRAWLHSKAFSIYGGSYEVQNNITAKRTLGLPG