Protein Info for GFF1368 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Putative gluthatione transporter,solute-binding component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF00496: SBP_bac_5" amino acids 67 to 441 (375 residues), 293.2 bits, see alignment E=1.5e-91

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 77% identity to pol:Bpro_2113)

Predicted SEED Role

"Putative gluthatione transporter,solute-binding component" in subsystem Utilization of glutathione as a sulphur source

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (528 amino acids)

>GFF1368 Putative gluthatione transporter,solute-binding component (Hydrogenophaga sp. GW460-11-11-14-LB1)
MIFRKTLMAALATTAMLTMGAASAQTIRIGNQGDALSMDPHSLNESLQLSVTNNVYEPLV
ARDQNLKLVPGLATSWKQTSPSVWRFELRKGVKFHDGAPFTADDVLFTFARASGEGSDMK
SYTNDVKEVRKVNDFTVDIETKGPFPILPDVLSLLFIMNKKWAEDNQATRPVDRRKGVEN
AASFRANGTGPFRLRERQPNVKTSFVRNGSYWGKIEGNVVNVEYTPIGNDSTRVAALLSG
QVDVIEPVPLQDVARINASGKSKVMQGPELRTIFLGMDQKRDELLYSSVKGKNPFKDKRV
RQAFYQAIDINGIQRTVMRGASKPMALMVGPGINGFDAAMNNRLPYDPDAAKKLLADAGY
PNGFEVALNCPNDRYVNDGAICQAVAANLARVGVKINLQAETKGTYFPKILRRDTSFYML
GWTPGTYDAHNALNALMRCVDDKGSGQFNLGAYCNPKVDELTVQIQSETDKAKRDALIKE
AFKLHTDDIGHLPLHQQALAWGVASNVELVQLADNFMPFRFMSVKPAK