Protein Info for GFF1360 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 555 transmembrane" amino acids 161 to 182 (22 residues), see Phobius details amino acids 193 to 218 (26 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 261 to 279 (19 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 314 to 332 (19 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details PF07696: 7TMR-DISMED2" amino acids 24 to 147 (124 residues), 59.2 bits, see alignment E=6.6e-20 PF07695: 7TMR-DISM_7TM" amino acids 165 to 365 (201 residues), 86.9 bits, see alignment E=2.9e-28 PF00990: GGDEF" amino acids 384 to 489 (106 residues), 46.5 bits, see alignment E=5.3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (555 amino acids)

>GFF1360 hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
LTLGWGVARASAPAATDVTLQAFYWVDTTGQASLEEVQGRPAGDFQPLDRYRSFDLANAA
LWLRLDLPALDTGRRWYLALSAAAFINRATLHVADAQGQWTVQQAGDLLSVSQWSHPDQT
PVFSVPAGSAGTVWLRLENRPASLSPRLLLLEEDTLQETRYWTFLLIGGYLGFGLLVLFW
GWVHARLYGDRAFIAYCCYVACMLGFQAAFTGVGGLFFWRDWAWWNDAAPAVFMLWLTAS
GIWFVREACAVSRHHRRVDRFVLAWCGFGLLFPVVYLLLQNQVVFAVLNLYGLLSVILSF
TLCVWTWRLGEKYAGWLALGFLPVHLSYPFPALRSAGVLPDSWATQYAVLIGSAIEIPLL
LYILHRRAKEFNENHARLRAIESTDPLTGLTIAPVLDLRLRDAMRRSRRYGHPCGLLMVE
LVNHADIAARQGREVADRALVVAASRLLHVVRDVDTVCRVANARFAVLVEGPLQPDHLML
LAQHIVAKGLEQVPSLPAGVSLRFRLVSMSLLDGASEGDDGRLLDRLGAALDQMADDARK
VVLHLPARSTVPTPS