Protein Info for GFF1347 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG001196: Membrane protein YedZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 88 to 106 (19 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details PF01794: Ferric_reduct" amino acids 56 to 170 (115 residues), 64.5 bits, see alignment E=5e-22

Best Hits

Swiss-Prot: 64% identical to MSRQ_POLNA: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Polaromonas naphthalenivorans (strain CJ2)

KEGG orthology group: None (inferred from 66% identity to adn:Alide_0834)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>GFF1347 FIG001196: Membrane protein YedZ (Hydrogenophaga sp. GW460-11-11-14-LB1)
MQRPPAGGTANRVLSHGATKPVAFLLASLPFVWLVFAAFADRLGANPAEALIRSLGDWTL
RFLVLVMAITPLRVSLGWPALLRLRRMVGLFVFFYACMHLLAYAWFDMEFDLTGIAADVV
KRPFILVGFLSWLLLLPLAATSFNRAIRTLGARRWQLLHRAVYVIACLAVLHFFWMRAGK
NDFAEVAVYAVILGSLLAWRLWRRLRS