Protein Info for PS417_06790 in Pseudomonas simiae WCS417

Annotation: arabinose transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 40 to 62 (23 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 128 to 147 (20 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 199 to 224 (26 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 264 to 289 (26 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details amino acids 327 to 350 (24 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details PF07690: MFS_1" amino acids 8 to 314 (307 residues), 144.9 bits, see alignment E=3.1e-46 PF00083: Sugar_tr" amino acids 41 to 179 (139 residues), 42.4 bits, see alignment E=4.7e-15

Best Hits

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 99% identity to pfs:PFLU1388)

Predicted SEED Role

"Putative sugar transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TWY7 at UniProt or InterPro

Protein Sequence (388 amino acids)

>PS417_06790 arabinose transporter permease (Pseudomonas simiae WCS417)
MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMAL
ATAKLPRKAALVALMGIFIIGNLLCALASDYNVLMFARVVTALCHGAFFGIGSVVAANLV
PANKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIGLIRFLPA
KRDEEKLDMRAELAALKGAGIWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWT
LLLIGLGLTVGNIIGGKLADKRLAATLIGVFISMAVVSTALTWTSVAVIPTEITLFLWAT
ASFAAVPALQINVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAHGFGLTRVPLAA
AVLAILALLVTLITFRQTGDADLAPATH