Protein Info for GFF1330 in Variovorax sp. SCN45
Annotation: UPF0061 protein YdiU
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 88% identical to SELO_VARPS: Protein adenylyltransferase SelO (selO) from Variovorax paradoxus (strain S110)
KEGG orthology group: None (inferred from 90% identity to vpe:Varpa_3196)Predicted SEED Role
"Selenoprotein O and cysteine-containing homologs"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (493 amino acids)
>GFF1330 UPF0061 protein YdiU (Variovorax sp. SCN45) MSLLAEDIPVADLGLRWKPGFSNLGPAFLTELRPTPLPDPYWVGRSEAVARELGLPPAWH ESGDTLAALTGSMPIAGTRPFATVYSGHQFGVWAGQLGDGRAIMIGETDGGLEVQLKGAG RTPYSRGGDGRAVLRSSIREFLCSEAMHGLGIPTTRALCVTGSDARVRREELESAAVVTR VAPSFVRFGHFEHFAANQREDELRALADYVIDRCYPACRNTDRFNGNAYAAFLETVSERT AALLAQWQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDGFDPRHICNHSDTSGRYAFNQQ PNVAYWNLFCLAQALLPLIGDQEIAVAALESYKSVFPREFEGRMRAKLGLADAAEGDRPL VEGVLKLLAAGKVDYTIFWRRLSNYMADGNVEPVRDLFLDRAGFDAWLLSFSERHAASDR AQAAGLMLRSNPKFVLRNHLGQQAIEASQQKDNSGVATLLALLETPFEEHPGADAYAGFP PDWASTIEISCSS