Protein Info for GFF1322 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Nucleoside ABC transporter, periplasmic nucleoside-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF04333: MlaA" amino acids 37 to 229 (193 residues), 261 bits, see alignment E=3.3e-82

Best Hits

KEGG orthology group: K04754, lipoprotein (inferred from 64% identity to pna:Pnap_0688)

Predicted SEED Role

"Nucleoside ABC transporter, periplasmic nucleoside-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (246 amino acids)

>GFF1322 Nucleoside ABC transporter, periplasmic nucleoside-binding protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKNLHHSPAGAVFKGAALALTVSLMAGCATGPDANPRDPLEPFNRGVYQFNDAVDTAVLK
PVATAYQKVTPSPVRTGVSNFFSNLGDLWSSVNAGLQLRPREATENLMRFSVNTVFGIAG
VLDIASEMGIPRTRLDFGQTMGRWGAPSGPYLVLPLLGPSSVRDGTGLVVDFVGDPVSSV
NHVPSRNSLMALRVVDTRAGLLRAGTLLDDAALDKYSFMRDFYLNRRQNQIDDLIDKGIG
LGDGER