Protein Info for PS417_06705 in Pseudomonas simiae WCS417

Updated annotation (from data): 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6)
Rationale: Specifically important for utilizing L-Tryptophan. Automated validation from mutant phenotype: the predicted function (2.8.3.6) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: 3-oxoadipate:succinyl-CoA transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01144: CoA_trans
  • amino acids 7 to 215 (209 residues), 172 bits, E=6.3e-55

Best Hits

Swiss-Prot: 89% identical to CATJ_PSEKB: 3-oxoadipate CoA-transferase subunit B (catJ) from Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13)

KEGG orthology group: K01040, glutaconate CoA-transferase, subunit B [EC: 2.8.3.12] (inferred from 100% identity to pfs:PFLU1364)

Predicted SEED Role

"3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12)" (EC 2.8.3.12, EC 2.8.3.6)

MetaCyc Pathways

• aromatic compounds degradation via β-ketoadipate (9/9 steps found)
• superpathway of salicylate degradation (7/7 steps found)
• catechol degradation III (ortho-cleavage pathway) (6/6 steps found)
• 3-oxoadipate degradation (2/2 steps found)
• toluene degradation III (aerobic) (via p-cresol) (8/11 steps found)
• 4-methylcatechol degradation (ortho cleavage) (4/7 steps found)
• L-glutamate degradation V (via hydroxyglutarate) (6/10 steps found)
• L-glutamate degradation XI (reductive Stickland reaction) (3/7 steps found)
• mandelate degradation to acetyl-CoA (9/18 steps found)
• superpathway of aromatic compound degradation via 3-oxoadipate (21/35 steps found)
• superpathway of aerobic toluene degradation (12/30 steps found)

KEGG Metabolic Maps

• Benzoate degradation via hydroxylation
• Butanoate metabolism
• Styrene degradation

Isozymes

Compare fitness of predicted isozymes for: 2.8.3.12, 2.8.3.6

Use Curated BLAST to search for 2.8.3.12 or 2.8.3.6

Sequence Analysis Tools

See A0A1N7UHE7 at UniProt or InterPro

Protein Sequence (259 amino acids)

>PS417_06705 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (Pseudomonas simiae WCS417)
MAYSTNEMMTVAAARRLKNGSVCFVGIGLPSKAANLARLTSSPDVVLIYESGPIGAKPSV
LPLSIGDGELAETADTVVPTGEIFRYWLQGGRIDVGFLGAAQVDRFGNINTTVVGDYHQP
KVRLPGAGGAPEIAGSAKSVLIILKQSARSFVDKLDFITSVGHGEGGDSRKRLGLPGAGP
VGIITDLCIMEPEAGTHEFVVTALHPGVTREQVVAATGWAIRFADQVDTTAEPTDVELTA
LRDLEARTAAAHGQAPGEA