Protein Info for GFF1319 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: ABC-type multidrug transport system, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 PF00005: ABC_tran" amino acids 23 to 165 (143 residues), 122.9 bits, see alignment E=1.5e-39 PF13304: AAA_21" amino acids 132 to 195 (64 residues), 31.8 bits, see alignment E=1.5e-11

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 79% identity to ajs:Ajs_0755)

Predicted SEED Role

"ABC-type multidrug transport system, ATPase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (312 amino acids)

>GFF1319 ABC-type multidrug transport system, ATPase component (Hydrogenophaga sp. GW460-11-11-14-LB1)
MPAVSFQQVSKTYSTPRGDLHALQSVSFDIEPGEFFGLLGPNGAGKTTLISVLAGLARAT
SGRVLVHGADVQADYATARRQLGVVPQELVFDPFFNVREALRIQSGYFGIQRNDAWIDEL
LEGLGLADKATANMRQLSGGMKRRVLIAQALVHKPPVIVLDEPTAGVDVELRQTLWQFVS
DLNKRMGSTVLLTTHYLEEAEALCGRIAMLKQGRVVALETTSALLARAASNVLRFKTDAA
LPIDLAVQARITGRVVQLPANDALAVERILARLREVGVSPEDIEIRKADLEDVFLDLTGA
QPRTAAPAEVTA