Protein Info for GFF1313 in Variovorax sp. SCN45

Annotation: Cellulose synthase operon protein C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1281 PF13432: TPR_16" amino acids 133 to 188 (56 residues), 22.2 bits, see alignment (E = 9.5e-08) amino acids 239 to 294 (56 residues), 24.5 bits, see alignment (E = 1.7e-08) amino acids 348 to 404 (57 residues), 22.5 bits, see alignment (E = 7.5e-08) PF14559: TPR_19" amino acids 133 to 188 (56 residues), 26.2 bits, see alignment (E = 4.5e-09) amino acids 246 to 299 (54 residues), 29.9 bits, see alignment (E = 3.1e-10) amino acids 322 to 385 (64 residues), 39.1 bits, see alignment 4.1e-13 amino acids 547 to 610 (64 residues), 27.6 bits, see alignment 1.6e-09 PF13181: TPR_8" amino acids 640 to 670 (31 residues), 13.3 bits, see alignment (E = 4.5e-05) PF05420: BCSC_C" amino acids 904 to 1253 (350 residues), 366 bits, see alignment E=1.1e-112

Best Hits

KEGG orthology group: None (inferred from 76% identity to vpe:Varpa_3211)

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1281 amino acids)

>GFF1313 Cellulose synthase operon protein C (Variovorax sp. SCN45)
VALEYYQALAGTPQGVNEGLKGLEQLVKDHPDNTSYRLALAQQKTYSEPTRRAGIRELVE
LTKQPAVATAARAAWRQALIWLDARAPDIPLYQDYLSNNQSDAAVAARLETLTTAKTAAA
NAPDIPVGEGFKALERGDAGTAEQRFQQALRTKADDTEALGGLGLVRMRQERFGEAQELL
ERAVRAGATKWNSALQSANYWVLVGQARAAQGKNDLRGAQSLYERAVRIDPREPVGQNAL
ADLRAAAGDFAQAEQGYKRVLESRPQNTQALRGLISVYGQTGRPDEALALSRRLTPEQAT
QMGGLRDIQVEQARNRARQQADAGDAAGAQRTLEDAMLAAPDSPWVRLDLANIYRKQGMV
SEARGVMEGLLMSQPDMPDALYASALLASETGDSAAGIQYLERIPAGSRTRDMAALQRRL
WAQSQAARALALARQGQVDAARGVLAQAESALSADMPAELWGQLAGAYAEIGDAPRALAM
SRQLLARSPTPSIGDRLLYASVLLKTKQDIELSAVLRQLAGVNMTASQRNDFDSLRIAFA
LRQTDALREAGNLEAAYNAMAPVLAERPNDPQAMAALARLYSAARDEGQALALYQRILQR
NPTDLDTLLAAAASASAQREHGEAENYVMAALKQAPDQSRVLAAAGRVYRNAGESRKAEQ
YLRAAVEAERQVASTGFAGPGGMASQMPPANPFAGMTGGAPSAAVPTGYPPAAGGNPFAQ
ARSQPVSYPVAANSAYPAYPAAAYPAGAYPAAYPAAPMAAAPGALPWGAAPAATSNTKGR
TTAATRTARNSKAANNTPQASAYVAQPGGQPVYIPQAQPAGYPQQQAGYPAPGYPPAAYP
SANAAYAQANTPPRSEPSWNAPLRTAPAPANSLQSELQDLESQRAVSLTAGTVFRNRAGE
AGLSQLSDFQLPIQARFPVGEGKIVVGVTPTVVDAGTPSSTYSTASRFGGGPTAFYNSIA
SQTTPGQQNAAGVGLNVGYEGKNFEGGIGTTPLGFPTTNVVGNATFKGSFGDSWNYKADI
SRRAVTDSVLSFAGAKDGRTGDRWGGVVATGVRGDIGYDDGTYGIYSYLAAHSLTGKNVA
SNSRVETGGGAYLHLLDSPGSKLTLGMNIGLMGYQKNLSYYTFGQGGYFSPQSFVSVAFP
VDWTGRASRFSWRVNASLGVQSFTQKSSPYFPTDPSRNADAQRVADGALALGLSSAVYNG
MYPSSSKTGLAYNFGAVLEYQLAPKMFLGGALGFNNAQNYRQFTGSMYLRYVFGGSNNLG
VPSLGGGTSLSPMVSPYTPLL