Protein Info for GFF1304 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 transmembrane" amino acids 31 to 58 (28 residues), see Phobius details amino acids 64 to 88 (25 residues), see Phobius details amino acids 91 to 91 (1 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 126 to 144 (19 residues), see Phobius details amino acids 159 to 174 (16 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 230 to 253 (24 residues), see Phobius details amino acids 265 to 291 (27 residues), see Phobius details amino acids 302 to 325 (24 residues), see Phobius details PF02653: BPD_transp_2" amino acids 48 to 313 (266 residues), 150.4 bits, see alignment E=2.8e-48

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 67% identity to mpo:Mpop_3556)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>GFF1304 hypothetical protein (Xanthobacter sp. DMC5)
MTTTDLAAGQGVAPRALPKAGAALDRWRVPLTIAVLAVLPFVLPSQALAVNVLIYGLFTV
GFNLLFGYTGLLSFGHAAFFGTGAYLTGMAIAHLGFGWFPAMLTGIVGASLLSAVIGALS
IRTRGIYFCMVTLALAQLVYYVALQASGWTGGENGLRGFTVAKADLIGGFSVNLLNPLAK
YYFIMFFAALALWFVSRVLNSPFGAAIEAVRENETRARACGFDVERTKLLSFILSGALCG
LAGTLSALHLSIVPLDALSVHTSSIVVMMTMLGGAGSFFGPFVGALVFLLIEDVASLWTT
HWQLIVGIVFILFVLFLPKGIWGSLIQLTRRRRAS