Protein Info for GFF1293 in Xanthobacter sp. DMC5

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 67 to 89 (23 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 223 to 240 (18 residues), see Phobius details amino acids 246 to 264 (19 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 9 to 280 (272 residues), 112.9 bits, see alignment E=8e-37

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 84% identity to sno:Snov_2397)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>GFF1293 High-affinity branched-chain amino acid transport system permease protein LivH (Xanthobacter sp. DMC5)
VTVFLDVLLGGVFHAAILFLVAAGLQLVFGVQKVINLACGSFYALGAYFGITAVGLASAV
GFPAWTVLPVLVLAGLVIGLVGLPVERILRTVYRRDESYQLLLTFGLLLMFQDVFRFFWG
ATPRTLDNAYLAYGTAEFLGLRVPTYNLLVIAASIAIAVALGAFLQRTRTGRIIRATAEN
RDMSEGLGVNSSRVFAAVFTVGCMLGTVGGALVVPASASSLDMAVELVVEAFAVVVIGGL
GSMRGALAGALIVGLIRAAAIMVLPEAEILSIYLVVIAVLILRPAGLFGKAMA