Protein Info for GFF1275 in Sphingobium sp. HT1-2

Annotation: Lysophospholipid transporter LplT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 50 to 71 (22 residues), see Phobius details amino acids 89 to 136 (48 residues), see Phobius details amino acids 151 to 175 (25 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 266 to 286 (21 residues), see Phobius details amino acids 297 to 320 (24 residues), see Phobius details amino acids 340 to 364 (25 residues), see Phobius details amino acids 378 to 400 (23 residues), see Phobius details amino acids 406 to 424 (19 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 391 (376 residues), 47.2 bits, see alignment E=7.6e-17

Best Hits

KEGG orthology group: None (inferred from 85% identity to sjp:SJA_C1-22790)

Predicted SEED Role

"1-acyl-sn-glycerol-3-phosphate acyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>GFF1275 Lysophospholipid transporter LplT (Sphingobium sp. HT1-2)
MQASLRLLKKRRFLPLFITQLLGAFNDNLFKNAMVLFVVYQVYNDERSETWFSALATGIF
IIPFFLLSALSGQLADQRDKAVIIRWVKAAEIVIMTVGATGLALIWSGIAVHILAIPLLL
AALFAMGIHSTFFGPIKYAILPQHLHDDEVLGGTGLVEAGTYIAILAGTILAGIIPIEAA
AIGVVVTAFIGYFASRAVPPAPSLLAKQPIDFHVIRSSVALVRGTMHIPRLYLAIMSISF
FWAVGSVLFIQFPPLVKNVLTADKSVASLFLAIFSIGIAIGSIAINRLLAGHVSAKYAPA
SVIGMGCCIIAFHVVCDLWTPAPGGQMLPLAGFLAHPMAIPLSLCLLGVATFGGMFVVPL
YAFLTTTVEKCEAARTVAANNIVNSGAMVVGSLIAIGLTLAGLEVVYQLLLVAAMCLPCA
WLAWRLHKACDGPACSGEL