Protein Info for PS417_06460 in Pseudomonas simiae WCS417

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF07715: Plug" amino acids 74 to 173 (100 residues), 71 bits, see alignment E=1.2e-23 TIGR01783: TonB-dependent siderophore receptor" amino acids 76 to 793 (718 residues), 228.9 bits, see alignment E=7e-72 PF00593: TonB_dep_Rec" amino acids 246 to 757 (512 residues), 148.7 bits, see alignment E=4.9e-47

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 69% identity to pmk:MDS_3617)

Predicted SEED Role

"FIG00462261: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0N9 at UniProt or InterPro

Protein Sequence (793 amino acids)

>PS417_06460 TonB-dependent receptor (Pseudomonas simiae WCS417)
MSSPTSRSHTLHTTLAPMFGLLAAGGVVPIALAGAPAAKSNDSVLSLPEIKVDGEATSTF
KVDRVTSAKISQPLLDAPQSVTIVPQQVLKEQNAQTLQEVLRNVPGITFMSGEGNLGWGD
LFSIRGFSSEQSLTVDGVRDAGMSTRTDTFNLQQAEVFKGTGSIESGVSAVGGSVNLVSK
EAHLGDANRVSAGIGTDAYRRLTADLNKQINDTTALRINLMKHYNQVAERDDVDYDRWGI
ATSFGFGLGTDTRFFVDTFYQKDTNTPDGGVPIQRGTNGDRMPGVKRSNGYGDSSLYTQE
NKTTSLTARFEHDFDWNDANLRNQTRWERSDNFAVLSPARFFAANANGQKTCTGTRCATL
GYTGVGPISQVPGSTVNAYSDYLNNSNTAYGILRGSDFGLSKRYTILDNQTDFNFNLTTG
SLQHAVVSGLEFYHETYGGLKRSAKVPAGDMLFDMNAPNHSFASTYVTKGEGDPRSVIDN
AGIYLGDTITLNDQWQVLGSLRYDNWRAQTSQRGQASISSTDGAVSGRVGAVFKPLPNGS
LYVSYSEAAQPSALGASTNNQIYGTASTSNYSPAKSKTYEMGTKWDITHDMLNVTAAIFR
TELDNAWEYQDGESAPVRALPAKRVDGIELGLQGNITPRWTAYSGFSALKSTQTKGINKG
AEAKNVPDLTANLWTTYAVTDALSLSYGEQYVGRRRYTDNKYVGGLNNNSSYANGPSGVY
AIYTRDHEKAPGYWLSNLAAQYKVNKDTTVNLNLNNVFNKFYYSQVGASLDGFQLYGIPG
AGRTLTASVDYEF